Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18650 131 / 2e-38 PDCB3 plasmodesmata callose-binding protein 3 (.1) AT2G03505 124 / 1e-35 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G69295 116 / 4e-32 PDCB4 plasmodesmata callose-binding protein 4 (.1) AT1G13830 111 / 2e-30 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G61130 111 / 2e-30 PDCB1 plasmodesmata callose-binding protein 1 (.1) AT5G08000 105 / 3e-28 PDCB2, E13L3 PLASMODESMATA CALLOSE-BINDING PROTEIN 2, "glucan endo-1,3-beta-glucosidase-like protein 3", glucan endo-1,3-beta-glucosidase-like protein 3 (.1) AT4G13600 99 / 2e-25 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G26450 93 / 3e-23 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G11820 90 / 8e-21 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G01630 88 / 4e-20 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036914 [exp] 233 / 6e-78 AT1G18650 139 / 2e-41 plasmodesmata callose-binding protein 3 (.1) Lus10004650 [exp] 183 / 6e-58 AT1G18650 141 / 4e-42 plasmodesmata callose-binding protein 3 (.1) Lus10026662 [exp] 181 / 4e-57 AT1G18650 145 / 2e-43 plasmodesmata callose-binding protein 3 (.1) Lus10034690 [exp] 127 / 1e-35 AT1G18650 157 / 8e-48 plasmodesmata callose-binding protein 3 (.1) Lus10021157 [exp] 119 / 4e-33 AT1G18650 157 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10040522 [exp] 118 / 1e-32 AT1G18650 158 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10021619 [exp] 115 / 2e-31 AT1G18650 151 / 1e-45 plasmodesmata callose-binding protein 3 (.1) Lus10032601 [exp] 105 / 3e-28 AT4G13600 167 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10040461 [exp] 90 / 8e-21 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158900 [exp] 149 / 4e-45 AT1G18650 129 / 1e-37 plasmodesmata callose-binding protein 3 (.1) Potri.008G095300 [exp] 145 / 5e-44 AT1G18650 140 / 2e-42 plasmodesmata callose-binding protein 3 (.1) Potri.012G065750 [exp] 125 / 1e-35 AT1G18650 142 / 1e-42 plasmodesmata callose-binding protein 3 (.1) Potri.015G057800 [exp] 115 / 8e-32 AT1G18650 151 / 3e-46 plasmodesmata callose-binding protein 3 (.1) Potri.017G055700 [exp] 110 / 5e-30 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G315700 [exp] 103 / 3e-27 AT4G13600 155 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G006100 [exp] 93 / 8e-22 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 91 / 4e-21 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G082900 [exp] 88 / 2e-20 AT1G79480 159 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.004G153800 [exp] 87 / 6e-20 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10037071 pacid=23152387 polypeptide=Lus10037071 locus=Lus10037071.g ID=Lus10037071.BGIv1.0 annot-version=v1.0 ATGGCTGTTGCTCTAGCCTTTCTAGTCATGTTCCTGGCCATCACTGGCCATACAACTGCTAATTACTGCCTGTGCAAAGATGGGGTTGCTGAGCAAGCCT TGCAAAAGGCCATTGATTACGCCTGTGGAGCTGGAGCTGACTGTACACCAATCCTCCAGAATGGAGCTTGCTTTCAGCCCAACACTGTGAAAGATCACTG CAACTATGCTGTCAATAGCTACTTCCAGAGGAAAGGCCAGGCCGCTGGAACCTGTGATTTCAGCGGTTCTGCCACTCCTAGTGTTTCTCCCCCTACCGGT GTAACTTCCACATGTGTTTTCCCTGCAAGTCCTGGCAATGCAGGAACCTCACCAGGAACAGGAACTGGCATGGTTCCTGGTACCGGCACAGGAACCGGCA CAGTCCCCGGCGCCGGCACCGGCACCGGCACCGGCACCGGAACCGGCGGCACTGGCACTGGAACAGGAACAGGGACAGGGACAGGGACAGGAACAGGGAT GGTTCCAGGATCAACAACTGGAACTCCATCAGTGTTTGGAACAGGTTCAGGGTTAGGTCCAACAGGGTCAGGGTTAGGTGATGGCAGTGGAGTTTCCCAA AAAGTTGCAAACTTGATCATAATATTTGCCTCCTCTTGTTTGACCCTCTTGGTTTCTGGGCTATAG
AA sequence Show only first row Show all	>Lus10037071 pacid=23152387 polypeptide=Lus10037071 locus=Lus10037071.g ID=Lus10037071.BGIv1.0 annot-version=v1.0 MAVALAFLVMFLAITGHTTANYCLCKDGVAEQALQKAIDYACGAGADCTPILQNGACFQPNTVKDHCNYAVNSYFQRKGQAAGTCDFSGSATPSVSPPTG VTSTCVFPASPGNAGTSPGTGTGMVPGTGTGTGTVPGAGTGTGTGTGTGGTGTGTGTGTGTGTGTGMVPGSTTGTPSVFGTGSGLGPTGSGLGDGSGVSQ KVANLIIIFASSCLTLLVSGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10037071 [exp]	0	1
AT4G25680			PPPDE putative thiol peptidase...		Lus10027510 [exp]	1.0	0.8984
AT1G52530			unknown protein		Lus10003678 [exp]	3.2	0.8605
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Lus10029924 [exp]	5.5	0.8896
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10008933 [exp]	6.3	0.8608
AT4G35510			unknown protein		Lus10035988 [exp]	8.7	0.8377
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10017323 [exp]	11.3	0.8375
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Lus10028189 [exp]	12.6	0.8142
AT2G27260			Late embryogenesis abundant (L...		Lus10043411 [exp]	13.0	0.8487
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	13.9	0.8562
AT5G01090			Concanavalin A-like lectin fam...		Lus10021117 [exp]	15.3	0.8423

Compare expression of checked genes

Lus10037071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.