Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13820 368 / 1e-128 alpha/beta-Hydrolases superfamily protein (.1) AT5G39220 328 / 5e-113 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 83 / 2e-18 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 71 / 6e-14 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 68 / 4e-13 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 64 / 8e-12 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 64 / 1e-11 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 60 / 2e-10 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 57 / 2e-09 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 54 / 3e-08 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036913 [exp] 493 / 3e-178 AT1G13820 466 / 5e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10032977 [exp] 333 / 1e-111 AT5G39220 366 / 2e-123 alpha/beta-Hydrolases superfamily protein (.1) Lus10028315 [exp] 73 / 1e-14 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10020926 [exp] 64 / 1e-11 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 63 / 2e-11 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 62 / 4e-11 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10023147 [exp] 61 / 1e-10 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10031137 [exp] 61 / 2e-10 AT4G25290 778 / 0.0 DNA photolyases;DNA photolyases (.1) Lus10036159 [exp] 58 / 5e-10 AT5G09430 308 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158800 [exp] 400 / 3e-141 AT1G13820 489 / 4e-175 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G120000 [exp] 348 / 1e-120 AT5G39220 433 / 9e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G093500 [exp] 341 / 1e-117 AT5G39220 435 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 79 / 8e-17 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 76 / 2e-15 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G097400 [exp] 70 / 7e-14 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G219700 [exp] 58 / 1e-09 AT5G19850 504 / 6e-180 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G129500 [exp] 57 / 5e-09 AT4G25290 809 / 0.0 DNA photolyases;DNA photolyases (.1) Potri.019G063900 [exp] 56 / 6e-09 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G054800 [exp] 54 / 4e-08 AT5G13800 610 / 0.0 Co-regulated with NYE1, pheophytinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10037072 pacid=23152334 polypeptide=Lus10037072 locus=Lus10037072.g ID=Lus10037072.BGIv1.0 annot-version=v1.0 ATGAGCAGTTGTGTGAAGCCATTGTCGATTCAGAGCAATGCAACTCCGTTGATTCTCCTTCATGGATTCGACAGTTCATGCTTAGAATGGAGATACACAT TCCCACAGCTTGAAGCAGCTGGATTAGAGACTTGGGCTGTGGATGTTCTTGGTTGGGGTTTCTCAGATTTAGGGAAGCTTCCACCATGTAATGTGCAAAC AAAGCGGGAGCATCTCTATCAGCTTTGGAAGGCCCACATTAGAAGGCCCGTCATATTGGTTGGACCAAGCCTTGGTGCAGCCATTGCAATTGATTTTGCT GCTCAGTATCCTGAAGCTGTGGAGAAGTTGGTTCTGATTGATGCAAGTGTGTACGCTGAAGGGACCGGCGACCTTGCAAAGCTTCCAAGGATGATAGCAT ATGCTGGAGTTTCGCTGCTGAAGAGTGTACCGCTGCGACTGTTTGTCAATATTCTCGCATTTAATGGGTTACCATTCGGAACAAGTGTTGATTGGATGAA CGATGCAACTGTTGATTTCATGATCAGTGGTGGCTATAACGTTGCTGATCTTATACCTAAGGTGAATCAGAAGACATTGATCATCTGGGGCGAAGATGAT AAGATCATTAGTAGCACATTAGGAGTGAGACTACATTGTGAGCTGCCAAATGCAGTCATACGCCAGATACCAAACTGCGGCCACATACCTCACGTGGAGA AGCCCGAATTGGTCGCCAAACTTATCGAGGAGTTCGTCCAGGAAGCTCCGTTCAAAGTGGCTCAACTTGCTTGA
AA sequence Show only first row Show all	>Lus10037072 pacid=23152334 polypeptide=Lus10037072 locus=Lus10037072.g ID=Lus10037072.BGIv1.0 annot-version=v1.0 MSSCVKPLSIQSNATPLILLHGFDSSCLEWRYTFPQLEAAGLETWAVDVLGWGFSDLGKLPPCNVQTKREHLYQLWKAHIRRPVILVGPSLGAAIAIDFA AQYPEAVEKLVLIDASVYAEGTGDLAKLPRMIAYAGVSLLKSVPLRLFVNILAFNGLPFGTSVDWMNDATVDFMISGGYNVADLIPKVNQKTLIIWGEDD KIISSTLGVRLHCELPNAVIRQIPNCGHIPHVEKPELVAKLIEEFVQEAPFKVAQLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10037072 [exp]	0	1
AT3G44020			thylakoid lumenal P17.1 protei...		Lus10019382 [exp]	2.2	0.9302
AT4G25830			Uncharacterised protein family...		Lus10019999 [exp]	2.4	0.9170
AT5G62840			Phosphoglycerate mutase family...		Lus10007865 [exp]	6.2	0.9180
AT4G25830			Uncharacterised protein family...		Lus10015528 [exp]	6.3	0.8935
AT3G12345			unknown protein		Lus10023467 [exp]	7.2	0.9033
AT1G69550			disease resistance protein (TI...		Lus10001788 [exp]	8.5	0.8996
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	11.3	0.8797
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10000754 [exp]	11.4	0.8700
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012126 [exp]	14.7	0.8949
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	16.0	0.8771

Compare expression of checked genes

Lus10037072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.