Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03510 318 / 2e-108 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036912 [exp] 352 / 1e-121 AT2G03510 503 / 2e-180 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10026664 [exp] 354 / 2e-119 AT2G03510 537 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004648 [exp] 352 / 1e-118 AT2G03510 541 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158700 [exp] 338 / 4e-116 AT2G03510 557 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10037073 pacid=23152542 polypeptide=Lus10037073 locus=Lus10037073.g ID=Lus10037073.BGIv1.0 annot-version=v1.0 ATGGATTCACAACGAGGAGGAGGAGCTCCACAACATCGGGAGCAAGAGCAACCACCTCCTCCACCGGCTCCCGGCGCCGGAAACCCTTTTCCTGCCATCA CTGATGATTGGTTATGCTGTACTATAATAGTTTGGCAGCAACATCCGTACTCTTTGAGGGGAAATGATAGCTCACCAGGATATGAATCTCATGATCGCAT TGCATTGCTAATTTGCTATGATGTAATGGTCCCATCAACATCAAGTTTAAAGAGTACCTTCTCAATAGTGAATCAAGTGCGGGAAGGCCATGTTGGGGTG TATTGGAGAGGTGGTGCTCTTTTGGACACAATTACAGAACCAGGTTTTCATTTCAAGTTGCCTTTGATAACTCAGTATGAACCAGTTCAAGTGACCCTCC AGACAGACCTAGTGAGGGACATTCCTTGTTGTACAAAAGGAGGTGTCATGATAAACTTTGAAAAGATCGAGGTAGTTAATAGGCTTCGTAAGGACTATGT ATACGACACCCTGATGAACTACGGAGTGCAGTACGACAATACTTGGATTTATGACAAGATTCATCACAAAATCAATCAATTCTGCAGCTCACATTCTCTC CAGCAGGGCGATTGCACCAGGTATGCTCCTGGAATTGAAATCCTCAGTGTCCGTGTAACAAAGCCTATAATCCCCGAGAGTATAAGAAAGAACTTCGAAC ACATGGAAGAAGAACGCACAAAGGTTCTAATCGCCATCGAGAAACAAAAAGTAGTGGAGAAAGAGGCAGAGACAGCAAAGAAAATGGCCATTAGTGAAGC TGAGAAGAGTGCCAGTGTAAGCAAGATCCGAATGGAGCAGAAGTTGATGGAGAAAGACAGTGAAAGGAGACAGCAATAG
AA sequence Show only first row Show all	>Lus10037073 pacid=23152542 polypeptide=Lus10037073 locus=Lus10037073.g ID=Lus10037073.BGIv1.0 annot-version=v1.0 MDSQRGGGAPQHREQEQPPPPPAPGAGNPFPAITDDWLCCTIIVWQQHPYSLRGNDSSPGYESHDRIALLICYDVMVPSTSSLKSTFSIVNQVREGHVGV YWRGGALLDTITEPGFHFKLPLITQYEPVQVTLQTDLVRDIPCCTKGGVMINFEKIEVVNRLRKDYVYDTLMNYGVQYDNTWIYDKIHHKINQFCSSHSL QQGDCTRYAPGIEILSVRVTKPIIPESIRKNFEHMEEERTKVLIAIEKQKVVEKEAETAKKMAISEAEKSASVSKIRMEQKLMEKDSERRQQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10037073 [exp]	0	1
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	2.4	0.8615
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10017785 [exp]	3.5	0.8241
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10006145 [exp]	5.9	0.8154
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	12.5	0.8161
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	14.2	0.8249
AT3G54460			SNF2 domain-containing protein...		Lus10039526 [exp]	15.0	0.8154
AT3G27930			unknown protein		Lus10008782 [exp]	15.5	0.7959
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10016372 [exp]	17.3	0.7730
AT5G44750		ATREV1, REV1	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013870 [exp]	17.7	0.7973
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10013723 [exp]	18.3	0.8196

Compare expression of checked genes

Lus10037073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.