Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03530 512 / 1e-177 ATUPS2, UPS2 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) AT2G03590 511 / 1e-177 ATUPS1 ureide permease 1 (.1) AT1G26440 480 / 6e-165 ATUPS5 ureide permease 5 (.1.2.3.4) AT2G03520 472 / 6e-162 ATUPS4 ureide permease 4 (.1) AT2G03600 389 / 3e-130 ATUPS3 ureide permease 3 (.1.2.3.4.5) AT2G03510 100 / 2e-22 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT1G08360 0 / 1 Ribosomal protein L1p/L10e family (.1) AT2G27530 0 / 1 PGY1 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) AT5G22440 0 / 1 Ribosomal protein L1p/L10e family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036911 [exp] 655 / 0 AT2G03530 575 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Lus10036910 [exp] 530 / 0 AT2G03590 589 / 0.0 ureide permease 1 (.1) Lus10037075 [exp] 529 / 0 AT2G03530 584 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Lus10004871 [exp] 318 / 3e-104 AT2G27530 201 / 3e-92 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Lus10036912 [exp] 127 / 9e-32 AT2G03510 503 / 2e-180 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10026664 [exp] 0 / 1 AT2G03510 537 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004648 [exp] 0 / 1 AT2G03510 541 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10020615 [exp] 0 / 1 AT2G27530 313 / 1e-107 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095500 [exp] 561 / 0 AT2G03530 553 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Potri.008G095600 [exp] 556 / 0 AT2G03530 559 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Potri.007G034800 [exp] 205 / 2e-61 AT2G27530 338 / 2e-119 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.004G202832 [exp] 203 / 6e-61 AT2G27530 337 / 7e-119 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.004G202766 [exp] 197 / 1e-58 AT1G08360 336 / 1e-118 Ribosomal protein L1p/L10e family (.1) Potri.010G158700 [exp] 102 / 2e-23 AT2G03510 557 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.007G035600 [exp] 0 / 1 AT2G27530 339 / 9e-120 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00687 [flax] [poplar] Ribosomal_L1 Ribosomal protein L1p/L10e family CL0184 [flax] [poplar] DMT PF07168 [flax] [poplar] Ureide_permease Ureide permease
Representative CDS sequence Show only first row Show all	>Lus10037074 pacid=23152481 polypeptide=Lus10037074 locus=Lus10037074.g ID=Lus10037074.BGIv1.0 annot-version=v1.0 ATGAAGGAAGCTGAAGCAAACAAACTGAAGTTGACGCCCCAGTTCCTTGAGCTGAAATTCATCGAAGCGATGGCGAACAACACGAAGGTCTTCTTTGGCG AGAAGGTGCCGAACATGGTTCTTGATCAGAGGCTGCTAGGAAACTTCCTGCATGGGACAATGTCCGGAGATGGAGGGGCTAACTCGGACAAGGGCTTATT TTGTAATGATAAAGCATTTGATAATCAGTTTTCAACAGAGATGGTCTTTGAAATTGCTGTGCTTCTTCCTCGTGTTATTCATGGTAAGCTTCAGAGTGAT TCGTTGAGAGAAGCGATCACAACCATCAAGACTGCTGCACAAGAGAAGCCGCGCAAGTTCACCGAGACCGTTGAGCTCCAGATTGGGTTGAAGAACTATG ACCCTCAGAAGGACAAGCGTTTCAGCGGCTCCGTTAAGCTGCCCCACATTCCCAGGCCTAAGATGAAAGTCTGCATGCTTGGAGATGCCCAGCACGTCGA GGAGGCTAATGCCATGGGTCTGCAATCCATGGACGTTGAGAGCTTGAAGAAGCTGAACAAGAACAAGAAGTTAGTGAAGAAGCTTGCCAAGCAGTACCAT GCTTTTTTGGCTTCTGAGTCTGTCATTAAGCAGATTCCCAGACTTCTCGGCCCTGGTCTCAACAAGGCAGGCAAGAAAGTTCCCCACACTTGTGAGTCAC CAGGAGTCACTCGAGTCCAAGGTGAACGAGATCAAGGCGACAGTGAAGTTTCAGCTGAAGAAGGTTCTGTGCATGGGTGTTGCAGTTGGAAACCTGGACA TGGACGAGAAGCAGATCTTCCAGAACGTTCAGATGAGCATCAATTTCCTCGTCTCCCTTCTGAAGAAGAACTGGCAGAACGTGAGTTTCAGTTTCTACCC CCCCTTAATTCGAATCTTGGGGATTTCGGAGGAGGAGGAACAACATTATTGACGAAAATGTATGTAGTAGAAAGCAAAGGAGGGGCCATATTATGCATGC TGCTGGCTCTGCTCTTCTTAGGGACATGGCCTGCAATCATGGCTCTACTCGAACGACGAGGTCGACTCCCTCAGCACACTTACCTTGATTACTCCATCAC CAATCTGCTAGCAGCCATCATCATTGCCTTCACATTTGGTGAGATCGGGAAAAACTCCCCGAACTTCATCCCCCAGCTCTCCCAGCTCAGTGAGAACTGG CCTTCTGTTATGTTTGCAATGGTGGGTGGAGTTGTGCTTAGCCTGGGGAATCTGTCGACTCAATACGCTTGGGCGTTTGTCGGTTTGTCGGTCACTGAAG TCATCACTGCTAGCATCACTGTTGTTATAGGTACTACTGTGAATTACTTCTTGGATGATAGGATAAACAAGGCCGAGATTCTTTTCACCGGAGTCGGATG CTTTCTCGTTGCAGTATTCCTTGGTTCGTTAGTCCATTCGTCCAATGCTGCTGACAATCGAGCTAAGCTCGAAAGCCTTTCGATCAAGAACGAAGTGGAG AATGGAGATGTCCGAGCTAAGAAGGCAGCATTTGGTACAGCGGATTTCCTTGTCCAGCTCGAGAACCGAAGAGCAATCAAGGTCTTGGGAAAGGGGACTA TAACAGGACTGGCAATAACATTCTTTGCCGGAGTATGCTTCTCGCTCTTCTCACCGGCTTTCAACCTGGCAACGAACGATCAATGGCACTCCTTGAAAGA CGGTGTTCCTAAATTAGTAGTCTACACTGCATTCTTCTGGTTCTCAGTGTGCTGCTTCGTGATCGCGATCATTCTCAACGTCACCTTCCTATACCGCCCG GTGCTTAACCTTCCGAAATCGTCCTTCAAGGCGTATCTTCACGACTGGGATGGCCGTGGATGGGCTCTACTAGCAGGCCTAATCTGCGGGTTTGGAAACG GGCTCCAGTTCATGGGCGGCCAAGCTGCTGGATATGCAGCAGCTGATGCTGTACAGGCACTTCCTTTGGTGAGCACATTCTGGGGGATACTTCTGTTCGG AGAGTACCGAAAATCGTCTCGAAGAACGTACTTGCTGCTCGTCGGAATGCTGGCCATGTTCGTCGTTGCTGTTGCCCTTCTCATGGCCTCTTCAGGCCAT CGAAAGTAG
AA sequence Show only first row Show all	>Lus10037074 pacid=23152481 polypeptide=Lus10037074 locus=Lus10037074.g ID=Lus10037074.BGIv1.0 annot-version=v1.0 MKEAEANKLKLTPQFLELKFIEAMANNTKVFFGEKVPNMVLDQRLLGNFLHGTMSGDGGANSDKGLFCNDKAFDNQFSTEMVFEIAVLLPRVIHGKLQSD SLREAITTIKTAAQEKPRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEANAMGLQSMDVESLKKLNKNKKLVKKLAKQYH AFLASESVIKQIPRLLGPGLNKAGKKVPHTCESPGVTRVQGERDQGDSEVSAEEGSVHGCCSWKPGHGREADLPERSDEHQFPRLPSEEELAEREFQFLP PLNSNLGDFGGGGTTLLTKMYVVESKGGAILCMLLALLFLGTWPAIMALLERRGRLPQHTYLDYSITNLLAAIIIAFTFGEIGKNSPNFIPQLSQLSENW PSVMFAMVGGVVLSLGNLSTQYAWAFVGLSVTEVITASITVVIGTTVNYFLDDRINKAEILFTGVGCFLVAVFLGSLVHSSNAADNRAKLESLSIKNEVE NGDVRAKKAAFGTADFLVQLENRRAIKVLGKGTITGLAITFFAGVCFSLFSPAFNLATNDQWHSLKDGVPKLVVYTAFFWFSVCCFVIAIILNVTFLYRP VLNLPKSSFKAYLHDWDGRGWALLAGLICGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILLFGEYRKSSRRTYLLLVGMLAMFVVAVALLMASSGH RK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03590		ATUPS1	ureide permease 1 (.1)		Lus10037074 [exp]	0	1
AT4G18100			Ribosomal protein L32e (.1)		Lus10020410 [exp]	2.0	0.9652
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10041264 [exp]	2.0	0.9599
AT3G06700			Ribosomal L29e protein family ...		Lus10037740 [exp]	3.5	0.9597
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10026664 [exp]	4.9	0.9563
AT3G06700			Ribosomal L29e protein family ...		Lus10016875 [exp]	5.0	0.9590
AT5G52370			unknown protein		Lus10016449 [exp]	8.3	0.9356
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10029423 [exp]	8.4	0.9562
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	8.5	0.9595
AT4G14320			Zinc-binding ribosomal protein...		Lus10017396 [exp]	9.8	0.9403
AT2G20450			Ribosomal protein L14 (.1)		Lus10011807 [exp]	12.0	0.9534

Compare expression of checked genes

Lus10037074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.