Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03590 570 / 0 ATUPS1 ureide permease 1 (.1) AT2G03530 565 / 0 ATUPS2, UPS2 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) AT2G03520 513 / 0 ATUPS4 ureide permease 4 (.1) AT1G26440 496 / 5e-176 ATUPS5 ureide permease 5 (.1.2.3.4) AT2G03600 398 / 2e-138 ATUPS3 ureide permease 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036910 [exp] 732 / 0 AT2G03590 589 / 0.0 ureide permease 1 (.1) Lus10036911 [exp] 555 / 0 AT2G03530 575 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Lus10037074 [exp] 555 / 0 AT2G03590 575 / 0.0 ureide permease 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095600 [exp] 610 / 0 AT2G03530 559 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Potri.008G095500 [exp] 604 / 0 AT2G03530 553 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF07168 [flax] [poplar] Ureide_permease Ureide permease
Representative CDS sequence Show only first row Show all	>Lus10037075 pacid=23152425 polypeptide=Lus10037075 locus=Lus10037075.g ID=Lus10037075.BGIv1.0 annot-version=v1.0 ATGTATCTGGTAGAGAGTAAAGGAGGAGCCATTGCCTGTATGTTCTTATCCCTCTTCTTCCTGGGGACATGGCCAGCTATCCTCACTCTACTCGAGCGTC GAGGCCGCCTTCCTCAGCACACGTATCTCGATTACTCCGTCACCAATCTCCTCGCTGCTGTCGTTATAGCTTTGACATTCGGCCAGATTGGCAGCAGCAC AACTGCAACTCCTAACTTTTTGACTCAGCTTTCCCAGTTAGGGGATAACTGGCCTTCAGTTTTGTTTGCCATGGGTGGTGGTTTGGTTCTCAGCTTGGGG AATCTCTGTACACAGTATGCTTGGGCTTTTGTTGGCTTGTCTGTCACTGAAGTCATCACTTCTAGCCTTGTTGTTGTCATAGGAACAACCTTGAACTACT TCTTGGACAACAGAATCAACAGAGCAGAGATTCTTTTCCCTGGAGTTGCTTGTTTTTTCATTGCAGCTTGCCTTGGATCAGCTGTCCATTCATCTAATGC TGCAGATAACAAAGCCAAGCTCGAAAACTTGCCAGTCGATCAAAAGCATGACGAGGAGAATAATGGGGGGCATAGTGGTACCAATGTGAAGAAGGCAGTA CCTGGAACGGCAGGTTTTCTGATCGAACTCGAAAAGAGAAGATCCATCAAGGTGTTTGGGAAGAGCACCATGATAGGATTGGCCATAACATTCTTTGCCG GTTTCTGCTTCTCTCTCTTCTCGCCCGCTTTCAACTTGGCAACGAACGATCAATGGCACGCCTTGAAGAAAGGAGTTCCTAAGCTGGTTGTCTACACTGC ATTCTTCTGGTTCTCTGCCTCTTGTTTTGTTCTGGCTATCGTTCTGAATGTGACTTTCCTTTACCGCCCGGTTCTGAACCTTCCCAGATCGTCGCCAAAG GCTTATTTCAACGACTGGAACGGCAGAGGCTGGGCATTTCTGGCTGGTCTTCTCTGCGGGTTCGGGAATGGCCTTCAGTTTATGGGTGGGCAAGCTGCTG GATATGCTGCTGCAGATGCTGTTCAGGCACTCCCACTTGTGAGCACATTTTGGGGGATACTGATCTTCAAAGAGTACAGAAGATCTTCGAGACGAACGTA TGTATTGCTTGTGGCAATGCTTTCTATGTTCATTGCTGCTGTTGGAATCCTCATGGGGTCTTCTGGGCATCGAAAATGA
AA sequence Show only first row Show all	>Lus10037075 pacid=23152425 polypeptide=Lus10037075 locus=Lus10037075.g ID=Lus10037075.BGIv1.0 annot-version=v1.0 MYLVESKGGAIACMFLSLFFLGTWPAILTLLERRGRLPQHTYLDYSVTNLLAAVVIALTFGQIGSSTTATPNFLTQLSQLGDNWPSVLFAMGGGLVLSLG NLCTQYAWAFVGLSVTEVITSSLVVVIGTTLNYFLDNRINRAEILFPGVACFFIAACLGSAVHSSNAADNKAKLENLPVDQKHDEENNGGHSGTNVKKAV PGTAGFLIELEKRRSIKVFGKSTMIGLAITFFAGFCFSLFSPAFNLATNDQWHALKKGVPKLVVYTAFFWFSASCFVLAIVLNVTFLYRPVLNLPRSSPK AYFNDWNGRGWAFLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGILIFKEYRRSSRRTYVLLVAMLSMFIAAVGILMGSSGHRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10037075 [exp]	0	1
AT4G27450			Aluminium induced protein with...		Lus10033418 [exp]	1.4	0.9517
AT3G61980			serine protease inhibitor, Kaz...		Lus10010285 [exp]	2.6	0.9347
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	3.0	0.9407
AT5G51970			GroES-like zinc-binding alcoho...		Lus10031660 [exp]	5.1	0.9458
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	7.2	0.9383
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Lus10016625 [exp]	8.8	0.9366
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	9.5	0.9379
AT5G14610			DEAD box RNA helicase family p...		Lus10032133 [exp]	9.5	0.8789
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030611 [exp]	12.2	0.9007
AT4G21510			F-box family protein (.1)		Lus10011255 [exp]	12.7	0.8933

Compare expression of checked genes

Lus10037075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.