Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13770 576 / 0 RUS3 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) AT3G45890 134 / 8e-34 RUS1 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) AT5G01510 109 / 1e-25 RUS5 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) AT2G31190 107 / 6e-25 WXR1, RUS2 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) AT5G49820 103 / 1e-23 RUS6, EMB1879 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) AT2G23470 69 / 2e-12 RUS4 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036909 [exp] 796 / 0 AT1G13770 627 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Lus10001047 [exp] 128 / 2e-31 AT3G45890 653 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10001413 [exp] 127 / 3e-31 AT3G45890 658 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Lus10010692 [exp] 112 / 1e-26 AT5G49820 701 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10038136 [exp] 112 / 1e-26 AT5G49820 706 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Lus10003558 [exp] 103 / 8e-24 AT2G31190 649 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10033888 [exp] 92 / 7e-20 AT2G31190 588 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Lus10016778 [exp] 82 / 2e-16 AT2G23470 570 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Lus10022474 [exp] 82 / 2e-16 AT2G23470 566 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095700 [exp] 634 / 0 AT1G13770 624 / 0.0 ROOT UV-B SENSITIVE 3, Protein of unknown function, DUF647 (.1.2) Potri.001G193300 [exp] 124 / 2e-30 AT3G45890 671 / 0.0 ROOT UVB SENSITIVE 1, Protein of unknown function, DUF647 (.1) Potri.005G224000 [exp] 100 / 8e-23 AT2G31190 691 / 0.0 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2) Potri.004G229500 [exp] 96 / 6e-21 AT5G49820 674 / 0.0 ROOT UV-B SENSITIVE 6, Protein of unknown function, DUF647 (.1) Potri.007G035300 [exp] 83 / 8e-17 AT2G23470 591 / 0.0 ROOT UV-B SENSITIVE 4, Protein of unknown function, DUF647 (.1) Potri.006G099700 [exp] 79 / 2e-15 AT5G01510 520 / 0.0 ROOT UV-B SENSITIVE 5, Protein of unknown function, DUF647 (.1) Potri.002G038600 [exp] 65 / 1e-11 AT2G31190 333 / 1e-113 weak auxin response1, ROOT UV-B SENSITIVE 2, Protein of unknown function, DUF647 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04884 [flax] [poplar] DUF647 Vitamin B6 photo-protection and homoeostasis
Representative CDS sequence Show only first row Show all	>Lus10037076 pacid=23152541 polypeptide=Lus10037076 locus=Lus10037076.g ID=Lus10037076.BGIv1.0 annot-version=v1.0 ATGGCCGGCGGGGAATCATCGGGGAGGACTTCGTCACCGTCGGAGCAGTTTATGGTGATGGAAGAATGGAACGGATCTTCCTCCACAAAGCTCTTCAAGA CAGCCACTCTCACTGCCTCTTCTTCTTCTTCTTCTTCTTCTTCCGCTTCTCCTTCTTTCTCAATCCAAAGGTCTGGAAGCCGCTTCAGTCACGTCTGGCG GGGAATTTTGCAAGCGTTTGTGCCTGAGGGGTTTCCGAGCAGTGTGACTCCGGATTATGTTCCATTTCAAGTATGGGATTCCCTGCAGGCGTTGTTGAGT GCGATTGGGGTTGGTGAGAAATCTGCGACTGTTATTGGTGCCACATTCCAGTGGTTTCTGAGAGACTTGACTGGAATGGTTGGAGGCATACTATTTACCT TTTACCAGGGTTCAAGTCTTGATAGCAATGCCAAAATGTGGCGTTTGGTGGCAGATCTTATGAATGATCTCGGTATATTTTTCCCGTTAGCTCAGTTACT CCTCCCTCTTGCTTCCTTCACTTTCATATGTAGACTTCTAATTGGATTCAACAGTGCACTGGGTTACCTCAATCCCATCCAATATGTTGTGGGGATGTTG ATGGACCTTGTCTCTCCATTGTTCCCCTCAGCCTTTATATTTGTGGTTTGCTTGGGGAGCATCTCAAGATCATTTACTGGTGTTGCTAGCGGTGCAACTA GAGCTGCTTTGACACAGCATTTTGCCCTTCAGAATAATGCAGCCGATATATCTGCAAAGGAAGGTAGTCAAGAGACAGTGGCAACAATGGTTGGCATGGC ACTAGGGATGCTTGTTGCACGAGTAACAACAGGATACCCTTTTGCAATCTGGTTGTGTTTCCTCTCAGTCACTGTTTTCCATATGTATGCAAACTACAGG GCTGTTCGTTGCCTTGCACTGAACTCCTTGAATATGGAAAGGAGTTCAATCCTTTTGCAGCATTTCATGAAAACTGGCCATGTGCTCTCTCCTGAACAGG TTGCTAGGATGGAGCATATTTTACCCTTGTGGACCACTCCTCGAATCTCGGAGGAGTTTATGTTACTGCATAGCAGGGTTCTATTAGGCGTCAGGATTTC GTCACTCTATCAAAATGAAGTGATACATCAATTACACTCTTCGGGATCTCTTTACAGGAAAGCAAAGTACTTACTGTTGGAAAGGAAGGGAATGATAAAC ATAATCGTGCATAAAGATGCCAATGCATCTGACATCCTCCAGTCATATATCCATGCCCTCGTTCTGGCTGATTGTGTCGGAGCAACCTCGTCCCTTCATC TAGAGAGCCAATCGTGGATGGATAAACAGTACCAGGCTTTCATTCAAAAGCTAAGCTCATCAGGATGGAAAACTGGGCGCCTTCTTTGCCCTTCGATAAT GTGGACCGCTAATTGGATATCCGGTTTTTCAAACGATAAGACTGATTAG
AA sequence Show only first row Show all	>Lus10037076 pacid=23152541 polypeptide=Lus10037076 locus=Lus10037076.g ID=Lus10037076.BGIv1.0 annot-version=v1.0 MAGGESSGRTSSPSEQFMVMEEWNGSSSTKLFKTATLTASSSSSSSSSASPSFSIQRSGSRFSHVWRGILQAFVPEGFPSSVTPDYVPFQVWDSLQALLS AIGVGEKSATVIGATFQWFLRDLTGMVGGILFTFYQGSSLDSNAKMWRLVADLMNDLGIFFPLAQLLLPLASFTFICRLLIGFNSALGYLNPIQYVVGML MDLVSPLFPSAFIFVVCLGSISRSFTGVASGATRAALTQHFALQNNAADISAKEGSQETVATMVGMALGMLVARVTTGYPFAIWLCFLSVTVFHMYANYR AVRCLALNSLNMERSSILLQHFMKTGHVLSPEQVARMEHILPLWTTPRISEEFMLLHSRVLLGVRISSLYQNEVIHQLHSSGSLYRKAKYLLLERKGMIN IIVHKDANASDILQSYIHALVLADCVGATSSLHLESQSWMDKQYQAFIQKLSSSGWKTGRLLCPSIMWTANWISGFSNDKTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10037076 [exp]	0	1
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	8.2	0.8952
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	8.2	0.8920
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	12.3	0.8883
AT4G35530			phosphatidylinositolglycan-rel...		Lus10002922 [exp]	12.5	0.8473
AT1G53600			Tetratricopeptide repeat (TPR)...		Lus10042207 [exp]	13.0	0.8517
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10025393 [exp]	14.0	0.8728
AT1G08220			unknown protein		Lus10021398 [exp]	15.6	0.8445
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	18.0	0.8835
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10038824 [exp]	21.1	0.8540
AT1G54650			Methyltransferase family prote...		Lus10005515 [exp]	22.2	0.8720

Compare expression of checked genes

Lus10037076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.