Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69290 822 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68980 714 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G03100 217 / 7e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09650 156 / 6e-40 CRM3, HCF152 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 94 / 8e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G17616 93 / 1e-19 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52620 88 / 7e-18 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 86 / 5e-17 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 84 / 6e-17 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G12100 81 / 9e-16 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036908 [exp] 536 / 0 AT1G69290 365 / 1e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020775 [exp] 202 / 6e-56 AT1G03100 961 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007353 [exp] 200 / 4e-55 AT1G03100 1003 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015059 [exp] 143 / 2e-35 AT3G09650 969 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036907 [exp] 117 / 7e-32 AT1G69290 100 / 5e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037275 [exp] 130 / 3e-31 AT4G17616 560 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 93 / 4e-19 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 84 / 1e-16 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 83 / 3e-16 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095800 [exp] 938 / 0 AT1G69290 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G212400 [exp] 215 / 4e-60 AT1G03100 1044 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G085300 [exp] 137 / 1e-33 AT3G09650 961 / 0.0 HIGH CHLOROPHYLL FLUORESCENCE 152, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G084400 [exp] 135 / 7e-33 AT4G17616 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 99 / 4e-21 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 92 / 5e-19 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 87 / 2e-17 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G035700 [exp] 85 / 8e-17 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.015G105400 [exp] 84 / 1e-16 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G139200 [exp] 82 / 4e-16 AT1G52620 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037077 pacid=23152271 polypeptide=Lus10037077 locus=Lus10037077.g ID=Lus10037077.BGIv1.0 annot-version=v1.0 ATGTTGTCGAGAGCAGCATTCTCATCGTTTCAACAGCGACGGTTCTCCTCCGAAGCTGCTTCAACCTTATACTCCTTTCTACAGCCTTCCATCTTCGCCG TCAAGCGAACCCCTACTCCAGCCGCCACCGCCGACGACGAATCTCCGCCGACAACAAAATCCTTGACCAACGACCGGGTGACCCAACTCGAATCGGCCGT CCAAAAGTCAATCCTCACGAATGAAACCGACGAAGCATGGAAGTCATTCAAATCCCTGACGTCAAACTCTGCTGCTCTCCCCAGTAAGCTGCTCACCAAC TCACTCATCAACCACCTAGCTTTAACCCCTAACAACAGGCTCAATCTCAAGAGGGCTTTCGCTTCCCTTGTCTATTTCGTGGAAAAGGACCCGACTTTAA TCAATTTCGCTACTGTTCGTACTGTTCTAGACTCCATGTTACGTGCCAACACAGCCGCCCCTGCTTTTGCCTTGATCAAGTGTATGTTTAAGAACAGGTA CTTCATGCCCTTCTCTTTATGGGGTGATTTGTTGGTTGAGATCGTAAGAAAGAGCAGCGGTGGTGGTGGGGGCTTTGCATCCTTTTTAAAAGTGTTTGAA GAAGCTTGTAGGGTTGCTGTTGATGAAAAGATGGAAACGATGAAGCCTGGTTTGGATGCTTGTAATTTAGCCTTAGAAGGTTGCTGCAAGGAGCTCGAAT CGGTTCGTGATGCTGAGCGTGTCGTCGAGACAATGTCGGTCTTGGGAGTTAGGCCTGATGAGGTTAGCTTTGGGTTTCTTGCTTATGTGTATGCGTTGAA AGGGAATTCAGTGAAGATAGATGAGCTCAAGGAGTTGAGGAAGGGCTTTGGCTTTGGTAACAGTAGTTTGTTTTACAGTAGTTTGATCGGAGGGTACGTG AGTTCGGGCGACTTGGAAGCTGTTTCGGATACGATTCTGAGTTGTTACGATGTGCATTTTAGTAAGGAGACGTTCTGTGAAGTGATCAATGGGTTTATGA AACACGGGAGTGTTAACGATTTAGCGAAGTTGATCGTTGAAGCTCAGAAACTGGAGTCAGCGAGTGATGTGGTCGAAGTCGAAAGATCAATTGGTTTTGG CGTTATTGATGCTTGTGTTAGTCTTGGATTTTCGGATAAGGCGCATAGCATTGTCGAGAAAATTATTGATCAAGGAAGCTCCGTGGGGCTTGGCGTCTAC TTGCCGATTCTGAAGGCATACTGTGAAGATCACAGGACAGCTGAAGCTACTCAGCTAGTTATGGAGATCAGTAACTCGGGAATGCAGTTGGATGCAGGTA GCTACGATTCGTTGATCGATGCAGCGATGACTAGCCAAGATTTCCAGTCGGCTTTTACTCTTTTTAGGGACATGAGGGAGGCCAGAACAATATCTGAACT GAAAGGAAGCTACTTGACGATAATGACAGGTTTGATGGCTAGCCACCGGCCCGAATTGATGGCTGCGTTTCTCGACGAGGTAGTTGAGGATCCTAGAATC GAAGTGAAGACTCACGACTGGAATTCGATCATTCATGCCTTTTGCAAAGCCGGGAGGTTAGAGGATGCTAGGAGGACTTTGAGGAGAATGATTTTCCTGC AGTACGAACCGAACAATCAGACATATCTGTCTCTTATCAACGGGTATGTCACGATAGAGAAGTACTTCAGCGTCTTGATGCTGTGGAACGAGGTGAAGCG GAAGATATCTACCGATAAGGAGAGAGGTGTTCAATTCGATCATGCTTTGGTCGAAGCGTTCCTGTATGCTCTCGTCAAAGGTGGGTTCTTTGATGCTGTA ATGCAAGTTGTGGAGAAATCCCAAGAGATGAAGATCTTTGTGGATAAGTGGAGATACAAACAAGCGTTTATGGAGAAGCATAAGAAGCTCAAGGTGTCTA AGTTGAGAAGGAACTTCCGGAAAATGGAAGCGCTTATAGCCTTCAAGAACTGGGCTGGACTAAATGCATGA
AA sequence Show only first row Show all	>Lus10037077 pacid=23152271 polypeptide=Lus10037077 locus=Lus10037077.g ID=Lus10037077.BGIv1.0 annot-version=v1.0 MLSRAAFSSFQQRRFSSEAASTLYSFLQPSIFAVKRTPTPAATADDESPPTTKSLTNDRVTQLESAVQKSILTNETDEAWKSFKSLTSNSAALPSKLLTN SLINHLALTPNNRLNLKRAFASLVYFVEKDPTLINFATVRTVLDSMLRANTAAPAFALIKCMFKNRYFMPFSLWGDLLVEIVRKSSGGGGGFASFLKVFE EACRVAVDEKMETMKPGLDACNLALEGCCKELESVRDAERVVETMSVLGVRPDEVSFGFLAYVYALKGNSVKIDELKELRKGFGFGNSSLFYSSLIGGYV SSGDLEAVSDTILSCYDVHFSKETFCEVINGFMKHGSVNDLAKLIVEAQKLESASDVVEVERSIGFGVIDACVSLGFSDKAHSIVEKIIDQGSSVGLGVY LPILKAYCEDHRTAEATQLVMEISNSGMQLDAGSYDSLIDAAMTSQDFQSAFTLFRDMREARTISELKGSYLTIMTGLMASHRPELMAAFLDEVVEDPRI EVKTHDWNSIIHAFCKAGRLEDARRTLRRMIFLQYEPNNQTYLSLINGYVTIEKYFSVLMLWNEVKRKISTDKERGVQFDHALVEAFLYALVKGGFFDAV MQVVEKSQEMKIFVDKWRYKQAFMEKHKKLKVSKLRRNFRKMEALIAFKNWAGLNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69290			Pentatricopeptide repeat (PPR)...		Lus10037077 [exp]	0	1
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10003024 [exp]	9.2	0.8619
					Lus10021411 [exp]	11.8	0.8329
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	14.8	0.8485
AT5G07400	FHA		forkhead-associated domain-con...		Lus10032515 [exp]	15.9	0.7719
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000471 [exp]	21.4	0.8415
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10015446 [exp]	27.7	0.8273
AT1G74580			Pentatricopeptide repeat (PPR)...		Lus10038974 [exp]	28.8	0.8025
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10021265 [exp]	30.9	0.8318
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10042094 [exp]	33.5	0.8209
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10023129 [exp]	34.3	0.8391

Compare expression of checked genes

Lus10037077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.