Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10380 150 / 1e-42 Putative membrane lipoprotein (.1) AT5G50290 104 / 2e-25 unknown protein AT3G17350 103 / 4e-25 unknown protein AT1G11915 89 / 9e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036906 [exp] 391 / 2e-137 AT1G10380 129 / 4e-36 Putative membrane lipoprotein (.1) Lus10036687 [exp] 164 / 8e-48 AT1G10380 316 / 2e-108 Putative membrane lipoprotein (.1) Lus10037235 [exp] 157 / 3e-45 AT1G10380 318 / 5e-109 Putative membrane lipoprotein (.1) Lus10001236 [exp] 116 / 1e-29 AT5G50290 368 / 2e-128 unknown protein Lus10042105 [exp] 115 / 4e-29 AT5G50290 366 / 9e-128 unknown protein Lus10043098 [exp] 113 / 3e-28 AT3G17350 334 / 7e-115 unknown protein Lus10028939 [exp] 90 / 1e-19 AT3G29170 80 / 3e-18 Eukaryotic protein of unknown function (DUF872) (.1) Lus10037236 [exp] 83 / 9e-19 AT1G10380 109 / 6e-36 Putative membrane lipoprotein (.1) Lus10023362 [exp] 77 / 2e-15 AT1G11915 360 / 2e-124 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158500 [exp] 406 / 3e-142 AT1G10380 164 / 1e-48 Putative membrane lipoprotein (.1) Potri.008G095900 [exp] 393 / 4e-137 AT1G10380 158 / 2e-46 Putative membrane lipoprotein (.1) Potri.010G040500 [exp] 178 / 4e-53 AT1G10380 337 / 2e-116 Putative membrane lipoprotein (.1) Potri.007G094800 [exp] 175 / 7e-52 AT1G10380 125 / 1e-33 Putative membrane lipoprotein (.1) Potri.008G099800 [exp] 111 / 5e-28 AT3G17350 332 / 2e-114 unknown protein Potri.010G152900 [exp] 111 / 6e-28 AT3G17350 339 / 4e-117 unknown protein Potri.015G078700 [exp] 110 / 1e-27 AT5G50290 387 / 4e-136 unknown protein Potri.004G007400 [exp] 97 / 2e-22 AT1G11915 360 / 1e-124 unknown protein Potri.011G007900 [exp] 93 / 4e-21 AT1G11915 379 / 6e-132 unknown protein Potri.005G021300 [exp] 56 / 6e-09 AT5G02070 130 / 5e-35 Protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037078 pacid=23152426 polypeptide=Lus10037078 locus=Lus10037078.g ID=Lus10037078.BGIv1.0 annot-version=v1.0 ATGTCGCAACCCTCCAGGATCTTCATCCATGGCGTCCTACTTTGTCTTCTCCCCTTCCTCTCTGCTGCTTTCCGACCAGGACCGATAAACGGTACATGCC ACGACACGTGTGGATCGATACCGGTGAAGTTCCCCTTCGGCAGTGGTTATGGATGTGGCCACCCTGATTTTGGTAAGTACGTAAGGTGCAACTCGGGTGC ATTAGAGCTCTCGACTGGAACCGGCATTTACACCATCTCCTCAATCGACTATCCGAGCAGCACATTGATCATCACAGACCCTTTCATGTCCACGTGCAGT TCGATGCAGAACTCCGGCAGCTTCATCCTGGATCGAGCTAGTCCGTTTGCATTAACACGGGATGATAACATATTTGCTCTGCTCGGATGTTCCACCACTT CTCCTGTGTTTGACCCCAGCGAGGATTTGTGCGAGAAAGGGTCGAGCTCTCGCGTCTGTAGAGGAATGTACTCTTGCCCGGGAATGTCGGGGATTGGATT GCCTCGGAATGCTGCACCGGCATCCACATGCTGTGTTTACGACTCGCCGATTCAACTTGCTGCGGGGTACGTGTTGGATCTCCCCAAGCTCCAGTGCTCC TCGTATACTTCAATTTACAGCTACGGAGGCAGTGAGGGGGATCCGATGAAGTGGAAGTACGGCATCTCTCTGCAGTATAACGGCTCGTACCTAACCGGTC TCTGCAAAGACTGCGAAACCAGTGGCGGGTTGTGTGGTTTCTCGGGGTTTGATCGGTCTTTCGCTTGCATTTGCCGGAACGGGAAGAACACTACCACTGC CTGCTTTGGCCAAAACTATGCATCGAGTGGGGCAAGGAGCTTGAAAATACCAACTCTGCTTAGTTTGGGAGGGATTCATAGACTGGATATCTCTGCTTCT AATTGCCCCAGCTTGAAATCTCTCTCCTTTGACCATCCCGGATTTGGAATGCCGAAACTCCTGCTCATCTCAGCTCCTCTCCTTGAGAGTTTTCGCTTCA AAAGCAATTGTAATTCCCTGAATGTAGTTTCGGCTCCGAATGTAAAATTCGTAAAGCTTCAACCCGAGACCTACCGTCTCGAGGGGACAGAAATCGAGGA ACTGATATTGAATTCCCATCTCTCGAGTCTCTCCACCTGA
AA sequence Show only first row Show all	>Lus10037078 pacid=23152426 polypeptide=Lus10037078 locus=Lus10037078.g ID=Lus10037078.BGIv1.0 annot-version=v1.0 MSQPSRIFIHGVLLCLLPFLSAAFRPGPINGTCHDTCGSIPVKFPFGSGYGCGHPDFGKYVRCNSGALELSTGTGIYTISSIDYPSSTLIITDPFMSTCS SMQNSGSFILDRASPFALTRDDNIFALLGCSTTSPVFDPSEDLCEKGSSSRVCRGMYSCPGMSGIGLPRNAAPASTCCVYDSPIQLAAGYVLDLPKLQCS SYTSIYSYGGSEGDPMKWKYGISLQYNGSYLTGLCKDCETSGGLCGFSGFDRSFACICRNGKNTTTACFGQNYASSGARSLKIPTLLSLGGIHRLDISAS NCPSLKSLSFDHPGFGMPKLLLISAPLLESFRFKSNCNSLNVVSAPNVKFVKLQPETYRLEGTEIEELILNSHLSSLST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10380			Putative membrane lipoprotein ...		Lus10037078 [exp]	0	1
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10033474 [exp]	5.3	0.7967
AT2G16940			Splicing factor, CC1-like (.1....		Lus10005059 [exp]	12.0	0.7771
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041911 [exp]	17.3	0.7904
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030919 [exp]	23.6	0.7869
AT5G45030			Trypsin family protein (.1.2)		Lus10017140 [exp]	32.6	0.7302
AT2G39210			Major facilitator superfamily ...		Lus10022614 [exp]	34.6	0.7723
AT3G13225			WW domain-containing protein (...		Lus10010579 [exp]	35.9	0.7099
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10017610 [exp]	55.5	0.6983
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10041732 [exp]	62.0	0.7628
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10023275 [exp]	82.2	0.7472

Compare expression of checked genes

Lus10037078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.