Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13750 928 / 0 Purple acid phosphatases superfamily protein (.1) AT5G50400 894 / 0 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 863 / 0 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13900 215 / 3e-61 Purple acid phosphatases superfamily protein (.1) AT2G03450 206 / 4e-58 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT3G52780 108 / 5e-25 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT4G13700 105 / 7e-24 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52810 100 / 4e-22 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52820 97 / 3e-21 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT5G34850 93 / 6e-20 ATPAP26, PAP26 purple acid phosphatase 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036904 [exp] 1239 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10012144 [exp] 864 / 0 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037080 [exp] 640 / 0 AT5G50400 605 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10036903 [exp] 534 / 0 AT1G13750 508 / 7e-177 Purple acid phosphatases superfamily protein (.1) Lus10039565 [exp] 335 / 1e-106 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 313 / 1e-98 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10019771 [exp] 306 / 5e-96 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10024179 [exp] 305 / 2e-95 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019772 [exp] 266 / 3e-77 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158400 [exp] 1060 / 0 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158250 [exp] 1004 / 0 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 1004 / 0 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.015G095900 [exp] 911 / 0 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 903 / 0 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.003G202200 [exp] 335 / 8e-107 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 333 / 8e-106 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G160500 [exp] 206 / 4e-58 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.017G055900 [exp] 108 / 1e-24 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.002G243900 [exp] 105 / 1e-23 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10037079 pacid=23152511 polypeptide=Lus10037079 locus=Lus10037079.g ID=Lus10037079.BGIv1.0 annot-version=v1.0 ATGATATTGTCTATAGTCTTACTGTTTCTTGCGACTCTGCAAGGATCGTCTTCTCATGGAGACCATCCATTGGCTAAGATTGCTATCCACGAGGCCAGAT TTGCTCTTGAAGATGGCGCTTCCATCAGAGCATCTCCTGCTGGTCTTGGCCTTCAGGGGCAGAATTCTGAGTGGGTGACTTTGAGTTTCACTTCAGCAAA CCCGTCAGACGATGATTGGATTGGAGTGTTCTCTCCTGCTAATTTTAGTGCTGCCATTTGCGATTCAGAAGGTTCAAAGGCAGCTCCTCCATTGTTGTGC ACTGCACCAATCAAGTATCAGTATGCAAACTACAGCAGTCCTAGTTACAAAAACTCCGGAAAAGGATCTCTTAGGCTTCAGTTGATTAACCAACGATCAG ACTTCTCATTTGCACTATTTTCTGGCGGTTTTGCCAAGCCTAAGCTTGTGGCCTTATCCAATAAGGTCGCCTTTGCAAATCCAAATGCACCGCTTTACCC ACGATTAGCGCAAGGAAAGACATGGAATGAAATGACTGTGACTTGGACAAGTGGTTATGGAATTGGTGTTGCAGAGCCTTTTATCGAATGGGGTCAGAAA GGAGGTCCTCTTGTTCGTTCCCCGGCTGGTACACTCACCATTGACCGTAGCAGCATGTGTGGTCCCCCAGCAAGAACAGTAGGGTGGCGTGATCCTGGAT TCATTCACACCAGTTTTCTGAAGGAGCTATGGCCAAACGCGCTATACACTTACAAGCTTGGACATAAGTTGTGCAATGGAACCTACATTTGGAGCTCAGA ATATGACTTCAGAGCATCTCCATATCCTGGCCAAGATTCTGTACAGCGGGTCATCATATTCGGTGACATGGGAAAGGATGAGGCAGATGGATCCAACGAA TATAACAATTACCAGCACGGCGCACTAAACACTACTAAACAGCTCGTTAACGACTTAAAAAACATTGATATCGTCTTCCATATCGGAGATATCGTGTATG CAAACGGGTATCTTTCACAATGGGACCAATTCACTGCACAGGTGGCACCCATTACGTCGAGAGTTCCTTATATGGTTGCAAGCGGTAACCATGAAAGAGA CTGGCCAGGGACAGGATCCTTCTACGGGTCCAAAGATTCCGGAGGAGAATGCGGTGTGATGGCCGAGACAATGTTCTATGTACCGGCTGAGAACAGGGCT AAGTTCTGGTACTCTACCGACTATGGAATGTTCCATTTTTGCATAGCTGACACGGAACACGATTGGAGGGAAGGAACCGAGCAGTACGAGTTCATCGAGC GCTGCTTTGCCTCTGTTGATAGGAGAAAGCAGCCGTGGCTCATCTTCATAGCGCACCGTGTACTAGGCTATTCGTCTGCGTCCTGGTACGCTGAGCAAGG GTCGTTCGAGGAACCTATGGGGCGGGAGAGTCTTCAGAAGCTTTGGCAGAAGTATAAAGTTGATATTGCTGTCTATGGCCACGTGCACAACTATGAGAGG ACGTGTCCCATTTACCAGAACATATGCCTGGACAAGGAGAAGCACAACTACAAGGGACCGTTTAACGGGACAATCCACGTCGTGGCTGGAGGAGGAGGAT CGGGGCTGGCGGATTTTACCCCGCTGAACACAACATGGAGTCTGTTCAAAGACCATGACTACGGGTTTGTAAAGCTTACAGCTTTTGACCACTCGAACCT GTTGTTCGAGTACAAGAAGAGCAGCGACGGTAAGGTCTACGATTCGTTCACGATCTCGAGGGATTACAGAGACATCTTGGCCTGCAGTGTTGATAATTGC TCCCCTACAACCATGGCATCTTAG
AA sequence Show only first row Show all	>Lus10037079 pacid=23152511 polypeptide=Lus10037079 locus=Lus10037079.g ID=Lus10037079.BGIv1.0 annot-version=v1.0 MILSIVLLFLATLQGSSSHGDHPLAKIAIHEARFALEDGASIRASPAGLGLQGQNSEWVTLSFTSANPSDDDWIGVFSPANFSAAICDSEGSKAAPPLLC TAPIKYQYANYSSPSYKNSGKGSLRLQLINQRSDFSFALFSGGFAKPKLVALSNKVAFANPNAPLYPRLAQGKTWNEMTVTWTSGYGIGVAEPFIEWGQK GGPLVRSPAGTLTIDRSSMCGPPARTVGWRDPGFIHTSFLKELWPNALYTYKLGHKLCNGTYIWSSEYDFRASPYPGQDSVQRVIIFGDMGKDEADGSNE YNNYQHGALNTTKQLVNDLKNIDIVFHIGDIVYANGYLSQWDQFTAQVAPITSRVPYMVASGNHERDWPGTGSFYGSKDSGGECGVMAETMFYVPAENRA KFWYSTDYGMFHFCIADTEHDWREGTEQYEFIERCFASVDRRKQPWLIFIAHRVLGYSSASWYAEQGSFEEPMGRESLQKLWQKYKVDIAVYGHVHNYER TCPIYQNICLDKEKHNYKGPFNGTIHVVAGGGGSGLADFTPLNTTWSLFKDHDYGFVKLTAFDHSNLLFEYKKSSDGKVYDSFTISRDYRDILACSVDNC SPTTMAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13750			Purple acid phosphatases super...		Lus10037079 [exp]	0	1
AT2G25760			Protein kinase family protein ...		Lus10005479 [exp]	2.0	0.8714
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10035655 [exp]	2.8	0.8859
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	3.0	0.8998
AT3G49720			unknown protein		Lus10019279 [exp]	5.5	0.8789
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10029144 [exp]	6.3	0.8538
AT4G39820			Tetratricopeptide repeat (TPR)...		Lus10025185 [exp]	10.0	0.8681
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	12.7	0.8674
AT5G27490			Integral membrane Yip1 family ...		Lus10031511 [exp]	14.4	0.8270
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10010594 [exp]	20.3	0.8595
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	21.9	0.8219

Compare expression of checked genes

Lus10037079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.