Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13750 605 / 0 Purple acid phosphatases superfamily protein (.1) AT5G50400 565 / 0 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 550 / 0 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13900 129 / 2e-31 Purple acid phosphatases superfamily protein (.1) AT2G03450 125 / 3e-30 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT1G56360 79 / 3e-15 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 77 / 1e-14 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT3G52780 74 / 6e-14 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT2G27190 74 / 9e-14 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT1G52940 72 / 2e-13 PAP5, ATPAP5 purple acid phosphatase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036904 [exp] 642 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10037079 [exp] 640 / 0 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10036903 [exp] 545 / 0 AT1G13750 508 / 7e-177 Purple acid phosphatases superfamily protein (.1) Lus10012144 [exp] 545 / 0 AT5G50400 885 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10036902 [exp] 239 / 2e-75 AT1G13750 198 / 1e-59 Purple acid phosphatases superfamily protein (.1) Lus10039565 [exp] 185 / 8e-51 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019771 [exp] 182 / 3e-50 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 181 / 1e-49 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10024179 [exp] 173 / 1e-46 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G158250 [exp] 731 / 0 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158400 [exp] 684 / 0 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 672 / 0 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.015G095900 [exp] 587 / 0 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 575 / 0 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 186 / 2e-51 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.003G202200 [exp] 176 / 1e-47 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G160500 [exp] 138 / 2e-34 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.011G138200 [exp] 74 / 7e-14 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 74 / 8e-14 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10037080 pacid=23152330 polypeptide=Lus10037080 locus=Lus10037080.g ID=Lus10037080.BGIv1.0 annot-version=v1.0 ATGGCTAGACATGGATCATCCATCTTCTTCCCAGCAATCCTTCTTTGCTTGGCTACTTCGCTTCCGGATACCCAGTCCCATGGAGCTGATCATCCATTCT CCAGAATCGCCATTCACAGGACAGTTTCTGCTCTCACTGACCTTGCCTACCTCAAAGCCTCTCCTTCCGTTCTTGGCCACAGTTCTTCGGATTGGGTGAC TGTTGACTACACCTCTCCGATCCCATCAGTTGATGATTGGATTGGTGTTTCCTCCCCAGCCAATTTCAGTTGCCCTTCTGAGAATCCAAGAGTCTTTCCT CCATTGTTGTGTACAGCTCCAATCAAGCCGAAGTTGCTTGCAGTTTCCAATACAGTGACCTTCTCGAACCCAAATGCGCCAGCATATCCGCGTATGGGAC AAGGGAAGGAGTGGAATGAAATGACTGTAACATGGACGAACGGGTATGGAATCGTTGATGCAGAACCTTTTGTTGAATGGGATCCTGAAAAAGAAGAAGA AGGAGATGATCATATAATCCATTCCCCAGCTGTGACACTGACTTTCGATAGAAGCAGCATGTGTGGTGCTCCTGCAAGAACGGTAGGGTGGCGAGATCCT GGATATATCCATACCAGCTTTCTGAAGGAATTGTGGCCTAATAGAATGTACACCTACAAGCTGGGTCACAGATTGCTCAATGGCACACATATCTCGAGCC GCAGTTACCAGTTTCGTTCATCTCCATACCCTGGACAAGCTTCGCCACAACGAGTAGTCATTTTCGGCGATATGGGAAAGGGAGGAGCAGATGGTTCGAG CGAGTATAACAACTTTCCACCTGAATCTCTGAACACCACGAGACAGATCTGGGATCAGTTCACTTCACAAATCGAGCCTATCGCATCAACAGTTCCTTAC ATGGTTGGCAGCGGGAATCATGAGCATGACTGGCCTGGGACAGGATCGTTCTATGGAAACATGGATTCTGGGGGAGAGTGTGGAGTTCTGGCTCAGACAT GTTCTATGTCCCAGCAGATAACCGGGCCAAGTTCTGGACTGGAGAGAAGGAACAAACAGTACAAGTTTGTCGAACATTGCCTAGCATCAGTCAACAGGAG AAAACAGCCGTGGCTCATCTTGCTCCCACACCGCGTGCTAGGCTACTCGTCTTGTATGTATTATGCAATGGACGGTTCGACTGAGGAACCGATGGGAAGA GAAGGGCTTCAAAAGCTCTGGCAAAAGTATAAGGTTGATATTGCCATGTTTGGCCATTTCCACAACTATGAAAGAACCTGCCCAGTCTATGAGGTACCAC AAACCCTAACTAAAATTCAATGTTCTTACTTATACAAACTTGCGCCAGATTTTTACCCTCCAAAAAACAGAAACATATGCACCAGAGAAGAGAAGAACTA CTACCAGGGAGCACTCAACGGTACGATCCATGTCATTGCTGGAGGTGCAGGAGCATCGTTGTCCATGATTTCTCCAGTTCATCTGGAATGGAGTTTATAC AGGGACTTTGATCATGGATTTGTGAAGCTTTCAGCACACAATCGTTCTGATCTTTTGTTTGAGTATAAGAAGAGTAGAGATGGGAAGGTCTATGATTCTT TCAGAATCTCCAGAGATTGTTGGGACATCTTGGCTTGCACTGTTGATAGCTGTCCAGGAACAACACTAGCATCTTGA
AA sequence Show only first row Show all	>Lus10037080 pacid=23152330 polypeptide=Lus10037080 locus=Lus10037080.g ID=Lus10037080.BGIv1.0 annot-version=v1.0 MARHGSSIFFPAILLCLATSLPDTQSHGADHPFSRIAIHRTVSALTDLAYLKASPSVLGHSSSDWVTVDYTSPIPSVDDWIGVSSPANFSCPSENPRVFP PLLCTAPIKPKLLAVSNTVTFSNPNAPAYPRMGQGKEWNEMTVTWTNGYGIVDAEPFVEWDPEKEEEGDDHIIHSPAVTLTFDRSSMCGAPARTVGWRDP GYIHTSFLKELWPNRMYTYKLGHRLLNGTHISSRSYQFRSSPYPGQASPQRVVIFGDMGKGGADGSSEYNNFPPESLNTTRQIWDQFTSQIEPIASTVPY MVGSGNHEHDWPGTGSFYGNMDSGGECGVLAQTCSMSQQITGPSSGLERRNKQYKFVEHCLASVNRRKQPWLILLPHRVLGYSSCMYYAMDGSTEEPMGR EGLQKLWQKYKVDIAMFGHFHNYERTCPVYEVPQTLTKIQCSYLYKLAPDFYPPKNRNICTREEKNYYQGALNGTIHVIAGGAGASLSMISPVHLEWSLY RDFDHGFVKLSAHNRSDLLFEYKKSRDGKVYDSFRISRDCWDILACTVDSCPGTTLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10037080 [exp]	0	1
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10037650 [exp]	6.8	0.8357
AT2G28350	ARF	ARF10	auxin response factor 10 (.1)		Lus10016090 [exp]	7.1	0.7960
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10040415 [exp]	7.3	0.8453
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10002311 [exp]	9.3	0.8353
AT1G80940			unknown protein		Lus10041624 [exp]	11.5	0.8098
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011737 [exp]	11.7	0.7776
AT1G78620			Protein of unknown function DU...		Lus10005554 [exp]	11.8	0.7644
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10017970 [exp]	12.1	0.7555
AT3G26100			Regulator of chromosome conden...		Lus10006455 [exp]	18.2	0.7652
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017604 [exp]	18.4	0.7755

Compare expression of checked genes

Lus10037080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.