Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03620 424 / 4e-148 AtMRS2-5, AtMGT3, MRS2-5, MGT3 magnesium transporter 3 (.1.2) AT1G80900 357 / 2e-121 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT1G16010 357 / 2e-121 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3) AT3G19640 232 / 3e-72 MRS2-3, MGT4 magnesium transporter 4 (.1) AT5G09690 229 / 3e-72 MRS2-7, ATMGT7 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) AT3G58970 204 / 8e-62 MRS2-4, MGT6 magnesium transporter 6 (.1) AT5G64560 188 / 2e-56 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) AT4G28580 148 / 5e-41 MRS2-6, ATMGT5 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORT 5, magnesium transport 5 (.1) AT5G09720 143 / 3e-40 Magnesium transporter CorA-like family protein (.1) AT5G09710 99 / 2e-23 Magnesium transporter CorA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036901 [exp] 459 / 4e-163 AT2G03620 388 / 4e-134 magnesium transporter 3 (.1.2) Lus10026063 [exp] 361 / 8e-123 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10014353 [exp] 361 / 9e-123 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3) Lus10015459 [exp] 207 / 5e-63 AT3G58970 560 / 0.0 magnesium transporter 6 (.1) Lus10024860 [exp] 203 / 4e-62 AT5G09690 478 / 3e-169 ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, magnesium transporter 7 (.1.2.3.4) Lus10021887 [exp] 200 / 9e-61 AT5G64560 574 / 0.0 magnesium transporter 9 (.1.2) Lus10008803 [exp] 186 / 3e-55 AT5G64560 570 / 0.0 magnesium transporter 9 (.1.2) Lus10001373 [exp] 173 / 4e-51 AT3G58970 450 / 2e-158 magnesium transporter 6 (.1) Lus10025531 [exp] 175 / 5e-51 AT3G19640 407 / 8e-140 magnesium transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096200 [exp] 487 / 6e-173 AT2G03620 438 / 1e-152 magnesium transporter 3 (.1.2) Potri.010G158100 [exp] 451 / 2e-158 AT2G03620 417 / 2e-144 magnesium transporter 3 (.1.2) Potri.001G043200 [exp] 355 / 1e-120 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.003G183600 [exp] 345 / 1e-116 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.009G086300 [exp] 228 / 4e-71 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.007G098200 [exp] 223 / 1e-69 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.008G161400 [exp] 205 / 8e-63 AT5G64560 552 / 0.0 magnesium transporter 9 (.1.2) Potri.006G081700 [exp] 204 / 7e-62 AT3G58970 538 / 0.0 magnesium transporter 6 (.1) Potri.010G077900 [exp] 201 / 3e-61 AT5G64560 531 / 0.0 magnesium transporter 9 (.1.2) Potri.007G098000 [exp] 152 / 3e-42 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01544 [flax] [poplar] CorA CorA-like Mg2+ transporter protein
Representative CDS sequence Show only first row Show all	>Lus10037081 pacid=23152633 polypeptide=Lus10037081 locus=Lus10037081.g ID=Lus10037081.BGIv1.0 annot-version=v1.0 ATGAGACGTTGTTCTCTTCCTTCGAGGGATTTAAGACTTCTAGACCCTGTTTTCATTTATCCTTCTACCATCCTGGGACGGGAGAAGGCGATTGTGGTCA GTCTTGAACAGATTCGATGCATAATCACTGCTGATGAGGTCATCTTGATGAACTCTCTGGATAATTCTGTTGTACAGTATGAATCGGAGCTTTGCAGGCG TCTTCAGAGCAACAAAGATCAAGCTGAGGACTTGCCATTTGAATTCAGAGCTCTGGAGTTGGCTCTTGAACTGACCTGCTCATCCCTTGATTCCCAGGTA AAAGAACTGGAAATGGAGATATACCCGGTACTGGATGAACTAGCTTCATCGATTAATACTCTTAACTTGGAACGTGTACGAAGACTCAAAGGACAACTCC TCGCACTAACTCAGAGAGTTCAGAAGGTCCACGACGAGATAGAACAGCTCATGGACGACGATGGAGACATGGCTGAAATGTATCTCACGGAGAAGAAACT GAGATCGGAAGCTTATGAGACAGGTGACCTGGGGTCTGAAAACGACATCTTGGAATACCCCAAGGAAGGCTCGAAATCCGCACCTTGTTCGCCAGTAAGG TCTGTGAGCGGGGGAGTCCAAAAACTTCAGAGAGCATTCAGTAGCTTTGTCACTTCAAGCAGACATGGAAGTTTGACTAGTTCGTCGAGTAACGGTGATA ACATTGTCCAACTTGAGATGTTGCTCGAGGCATACTTCGGAGCCATTGACAACACTCTAAGCAAGTTATCCTCGCACAAAGAATACATCGACGACACAGA AGATTTTATCAACATTAAATTGGGAAATATCCAGAACCAGCTCATTCAGTTCGAGCTGCTGCTTACCGCAGCAACCTTTGTGGCCACGGTGTTTGCTGTC GTGACAGGAGTGTTTGGTATGAACTTTGAGGACTCGGTTTTCGAAAATCCTGCGACTTTCCATTGGGTCCTGATCATAACAGGTGTTGCCTGTTGTTTCA TGTACATGTCTTTCTTGTTCTACTTCAGGCACAAGAAAGTCTTGCCACTGTGA
AA sequence Show only first row Show all	>Lus10037081 pacid=23152633 polypeptide=Lus10037081 locus=Lus10037081.g ID=Lus10037081.BGIv1.0 annot-version=v1.0 MRRCSLPSRDLRLLDPVFIYPSTILGREKAIVVSLEQIRCIITADEVILMNSLDNSVVQYESELCRRLQSNKDQAEDLPFEFRALELALELTCSSLDSQV KELEMEIYPVLDELASSINTLNLERVRRLKGQLLALTQRVQKVHDEIEQLMDDDGDMAEMYLTEKKLRSEAYETGDLGSENDILEYPKEGSKSAPCSPVR SVSGGVQKLQRAFSSFVTSSRHGSLTSSSSNGDNIVQLEMLLEAYFGAIDNTLSKLSSHKEYIDDTEDFINIKLGNIQNQLIQFELLLTAATFVATVFAV VTGVFGMNFEDSVFENPATFHWVLIITGVACCFMYMSFLFYFRHKKVLPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10037081 [exp]	0	1
AT3G28760			unknown protein		Lus10005250 [exp]	1.0	0.9181
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	3.2	0.8574
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	4.9	0.8649
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10003245 [exp]	5.1	0.8663
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Lus10016199 [exp]	5.8	0.8241
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10000540 [exp]	6.3	0.8488
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	9.2	0.8597
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10012457 [exp]	9.7	0.7830
AT3G13000			Protein of unknown function, D...		Lus10033328 [exp]	10.2	0.8321
AT3G47570			Leucine-rich repeat protein ki...		Lus10004827 [exp]	10.5	0.8427

Compare expression of checked genes

Lus10037081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.