Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03630 76 / 1e-15 unknown protein AT5G39200 52 / 2e-07 unknown protein AT1G74220 49 / 5e-06 unknown protein AT3G02125 49 / 7e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036900 [exp] 713 / 0 AT2G03630 82 / 3e-17 unknown protein Lus10026665 [exp] 103 / 2e-23 AT2G03630 73 / 2e-14 unknown protein Lus10004647 [exp] 101 / 5e-23 AT2G03630 62 / 6e-11 unknown protein Lus10030710 [exp] 64 / 1e-10 AT5G39200 71 / 3e-14 unknown protein Lus10013196 [exp] 64 / 1e-10 AT3G02125 67 / 5e-13 unknown protein Lus10032983 [exp] 59 / 3e-09 AT3G02125 59 / 6e-10 unknown protein Lus10029645 [exp] 57 / 1e-08 AT2G03630 62 / 4e-11 unknown protein Lus10021153 [exp] 48 / 2e-05 AT5G08020 884 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096300 [exp] 85 / 2e-17 AT2G03630 91 / 2e-20 unknown protein Potri.010G158000 [exp] 83 / 7e-17 AT2G03630 108 / 7e-27 unknown protein Potri.017G094300 [exp] 67 / 5e-12 AT5G39200 70 / 3e-14 unknown protein Potri.015G057200 [exp] 58 / 8e-09 AT1G74220 77 / 9e-16 unknown protein Potri.004G120400 [exp] 56 / 3e-08 AT5G39200 68 / 1e-13 unknown protein Potri.012G061700 [exp] 56 / 3e-08 AT1G74220 91 / 1e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037082 pacid=23152503 polypeptide=Lus10037082 locus=Lus10037082.g ID=Lus10037082.BGIv1.0 annot-version=v1.0 ATGGATACCAGGCCTGAGAAGGGCAGCGGCACTAGAGATTCTGATACTCAGAAGGAAATCAGTACTAGAGATTCTCAGACGGAAAGCAGTGCTAGAGATC CTCAAACAGAAAGCAGAGCCAGAGATCCTCCTCACTCACTTCCTGTTGTTGATCAGAAGGAGGTTGAACAAAACGACAACATCGAGACATATCCGAAGCT TCATATTCGGTCTGAATTTGAGGGTTTTCCCGTAGAGCTAGGCCATGATCAGACATCAAATGGGGATGAGATCAGCAGTAAGAACTCGAGTTTTGATCAC ATTGAAGTTGATCCGGAGATACTCAATCCAAGGATGACTGATGACAAGAGCTCGGAGCCCATCCATCCAGAGGAAACTGATGAGAGTTCTAGAAATGGTT CATTTAAGATTAATTCAGGTGTGATCTCCAGAAATCATAGCAGTGAGCACTTGGAATCACAACCTGAGACTGTTGATGATGGTGGTGGAAGTCACATTGA GGAGAGTCAGCTAACAACATTGTCACAATCAGAAGATCAACCTACAGTTGAAGACAATAAACCTACGTCTCCAATCATAAAAATGGGCTCATCATCATCA TCCTCATCTTCCTCAGAATCTTCATCGGGTAAAGGTCCTTTCCCGGGGGATTTGAACGATGACTTCGACCCTCGGAGTCCTGGCGAGGACAAAAAACTAG CAAGAGACACTATTTCTGAACAGAACAAGCCAGAGGAAGCAGAAAGCAGCTCTGTTAGCCCAGTAGTCGCATCTCCTGCAGGTTCCGAGATCACTTTGTC AGGAATTTCACCGATACAATCCCCACCGGTTCAAGTCATGCAAAGATCGGAAGGATATGACCCGAACCGGATTCCACAATCTATATTCCAGAGAAGCACA TCAGATGCACAGAACGACTGGAGCATTGCCTCGAACGAGTCATTGTTCAGCATCCATGTAGGAGCCAGTACTAGCTTCTCCAGAGAACAAGCAGCATTCA TCAAGGCTGAAGAAGTTGTTCCCAAACAGGACGAACCTTTCTCGTTCACCCCTCGTAAGCCATCAGACGAGACCCCCGAATCTCCTACTAGTCCCGCTGC ATTCCCAGTTTCGGAACTCGCTGCTGCTGATGCAGTAACAGCTTCTTCCCCAGCTGTAGAGCCTCGGAAACAGAACGCCGGGACAAAGACCGAAATAATA AGTACAACTCCTGTGCAGTATCCATCCCCAGAGAGTGCCAAAAGGGCAGCAGCAGAAGAACGTCGAAGTAGTAATCAAAAGAGAGCGCCAATCGTGTCAT GGAGATCAAACAGAAATTCGAATTTTTCGGACAGGAGTCAGAACAGCACCAAGTCCTTTGCTTTCCCTATTTTGAATGACGATGCGAGATTAGAATCTTC CTCCACGCCCGTGAACAAGGAAGAGCAGCGTCAAGAGACAGGTACATCAGCGGCAGTTGTTGGACCTCCTCCAAGGAAGGTGAAACGGCGGTGGTACAGG TTCTTGTATTGCTGCTCGTGGAAGGGGTGCTGTTGCTGTTCTTGCAGGTGTTGCTCTTGCCCTTCTTTCAGGTGTTTTCGTAGTTCGAAATGTGTCCGTT GTTGA
AA sequence Show only first row Show all	>Lus10037082 pacid=23152503 polypeptide=Lus10037082 locus=Lus10037082.g ID=Lus10037082.BGIv1.0 annot-version=v1.0 MDTRPEKGSGTRDSDTQKEISTRDSQTESSARDPQTESRARDPPHSLPVVDQKEVEQNDNIETYPKLHIRSEFEGFPVELGHDQTSNGDEISSKNSSFDH IEVDPEILNPRMTDDKSSEPIHPEETDESSRNGSFKINSGVISRNHSSEHLESQPETVDDGGGSHIEESQLTTLSQSEDQPTVEDNKPTSPIIKMGSSSS SSSSSESSSGKGPFPGDLNDDFDPRSPGEDKKLARDTISEQNKPEEAESSSVSPVVASPAGSEITLSGISPIQSPPVQVMQRSEGYDPNRIPQSIFQRST SDAQNDWSIASNESLFSIHVGASTSFSREQAAFIKAEEVVPKQDEPFSFTPRKPSDETPESPTSPAAFPVSELAAADAVTASSPAVEPRKQNAGTKTEII STTPVQYPSPESAKRAAAEERRSSNQKRAPIVSWRSNRNSNFSDRSQNSTKSFAFPILNDDARLESSSTPVNKEEQRQETGTSAAVVGPPPRKVKRRWYR FLYCCSWKGCCCCSCRCCSCPSFRCFRSSKCVRC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03630			unknown protein		Lus10037082 [exp]	0	1
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	8.5	0.6665
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	12.6	0.6564
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	17.5	0.6215
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	21.4	0.6211
AT1G60630			Leucine-rich repeat protein ki...		Lus10019429 [exp]	23.4	0.6199
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	24.0	0.6211
AT2G04230			FBD, F-box and Leucine Rich Re...		Lus10030031 [exp]	26.5	0.5671
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	27.1	0.6166
					Lus10036838 [exp]	27.9	0.5812
					Lus10036841 [exp]	29.0	0.5812

Compare expression of checked genes

Lus10037082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.