Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02130 546 / 0 TOAD2, RPK2, CLI1 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) AT1G69270 540 / 0 RPK1 receptor-like protein kinase 1 (.1) AT2G23950 278 / 1e-84 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 270 / 6e-78 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G35620 255 / 3e-76 FEI2 FEI 2, Leucine-rich repeat protein kinase family protein (.1.2) AT1G31420 247 / 3e-73 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT3G59110 231 / 4e-68 Protein kinase superfamily protein (.1) AT1G34110 240 / 7e-68 Leucine-rich receptor-like protein kinase family protein (.1) AT1G56720 229 / 8e-68 Protein kinase superfamily protein (.1.2.3) AT4G33430 232 / 1e-67 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036899 [exp] 1175 / 0 AT3G02130 559 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10004646 [exp] 708 / 0 AT3G02130 552 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10026666 [exp] 701 / 0 AT3G02130 555 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10007206 [exp] 506 / 2e-166 AT3G02130 964 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10010087 [exp] 503 / 2e-165 AT3G02130 962 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10031976 [exp] 422 / 5e-139 AT3G02130 531 / 2e-175 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Lus10019145 [exp] 263 / 9e-79 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 253 / 4e-75 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10034753 [exp] 241 / 8e-71 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G096400 [exp] 598 / 0 AT3G02130 1140 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.017G094400 [exp] 561 / 0 AT3G02130 1405 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.004G120500 [exp] 557 / 0 AT3G02130 1375 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.014G144600 [exp] 442 / 8e-143 AT3G02130 785 / 0.0 TOADSTOOL 2, clv3 peptide insensitive 1, receptor-like protein kinase 2 (.1) Potri.003G105000 [exp] 266 / 3e-80 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G129000 [exp] 264 / 1e-79 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.017G108000 [exp] 263 / 4e-79 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.008G110300 [exp] 256 / 2e-76 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.012G071100 [exp] 254 / 1e-75 AT5G62710 943 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G059100 [exp] 253 / 2e-75 AT5G45780 837 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037083 pacid=23152602 polypeptide=Lus10037083 locus=Lus10037083.g ID=Lus10037083.BGIv1.0 annot-version=v1.0 ATGAAGCACGAAACCTTCTTCTTCCTGCTCTGTTTCTGTTCCCTAGCTGTTTGCTTCTCAATCCCAGAGCCCTCGTCGTCTCCCGAAAAGTCAGCGCTGC TGGACTTCAAATCCTCACTCTCCGACCCACAAGGGGTTCTCACGACGTGGAATTCAGAGCTCCACCACTGTTCATGGTCCGGGATCACCTGCAACTCCCG ACGACGAGTCATCTCTCTGAAACTCCCCGCCGGAGCTTCTATTCCTTGTCGGTACGCTTTCAAGTTACCAATTTTAGGGGTTAGGATGAAAGGGCTATGT ACTTCTGGTAAACTGAAGGGAAAGTTGTCACCTTTGATTGGGAAGCTTAGTGAAATTATGGTTTTGTCTCTGCCCTTTAATGAACTGGGAGGGGAAATCC CTGTGGAGATTTGGGGGTTGGAGGAGCTGGAAGTGCTTGATCTTGAAGGAAACTCTTTTGTTGGGGAATTGCCTCGTGGTGGATTTTCTGGGTTGAGTAA ATTGAAGGTTTTGAATCTAGGGTTCAATAGAATTGAAGGAGTTGTCCCCCAGAGTTTTGGGGATCTCAGATCTCTTGTCACTCTTGATTTGAGGTTCAAC AAGTTCCATGGCAAAGTTCCAGCTGGTGTTTATCAGTTCAAGCACCTGTCCTTAGATGGTAACAATCTGACACGGGACAAATTCGACCAGAAATCGTCCG GTTCAAGCAATGCTAGATCACTAATTGCGGATACCTCGAATCGTAAGGTTTCGCCAGGTTCAGTTCATGTGTCCATCAGGTATGATGATGCATCAGGAGC AGCTACTACTACCAGCAGCAGGGATCTGCTTGAGAATAATACCACCATGGACGAGGCTGGAGCGAGCCACGGGCTAAGCCCAATTGAGATTGCATCGGTG GCATCTGCATCAGCAATCGTCTCGGTCCTCATAGTCTTGGTCGTGCTGTTCTTCTACATGAGGAAATGGGCGCCGAATTCGAAAGTCCAGGTCTCGGAGC CAAAGGACATCATCGAATTCGTCAACATCGGAGTTCCTTTACTCTATGAGAACATCGTCCTCGCCACAGCAAACTTCAGCACGAGGAACTGCATAGGCAA CGGAGGGTTCGGCGCTACTTACAAAGCCGAGATCGCACCAGGAACTTTGGTCGCCGTGAAAAGGCTGGCTGTCGGAAGGTTCCACCAAGGTGTTCAGCAG TTCCACGCAGAGATCAAGGCTCTAGGAAGGGTGAGGCACCCAAATCTCGTAACCCTAGTAGGCTACCACGCGAGCGAGACCGAGATGTTCTTGATATACA ACTACTTAGCTGGAGGCAATCTCGAGGCATTCATTAGAGGAAGATCTGCCCCAACGGTTCAGTGGAAGATCCTCCACAAGATCGCGTTGGATATTGCTCG AGCCCTCACCTATCTCCACGACCAGTGTGCTCCCCGGATCTTGCATCGTGATGTCAAGCCTAGTAACATACTTCTCGACGATGGCTTCAATGCTTACCTC TCCGATTTTGGACTCGCCAGGCTGTTAGGGACCTCCGAGACACACGCTACGACCGGTGTTGCTGGCACTTTTGGCTACGTGGCACCAGAGTATGCAATGA CATGCCGTGTCTCTGAGAAAGCTGATGTGTACAGCTACGGAGTGGTGCTGCTCGAGCTGATATCGGACAAGAAAGCGCTTGACCCTTCGTTCTCGTCCCA AGAGAATGGTTTCAACATCGTTTCGTGGGCGTGCATGCTGCTGAGGCATGGCAGGGCCAAGGAAGTTTTCACCGCGGGGCTGTGGGAGTCTAGCCCTCAC GATGATCTAGTCGAGATGCTGCACTTGGCCATCACTTGTACGGACGACACACTATCCACGAGACCGACCATGAAGAATGTCTTGCAACGGCTGCGCCAAA TCAGACCTTCTAAGCCTCATGGTGCTCCTGCTCCAGGATCTCCGGCTTTATGA
AA sequence Show only first row Show all	>Lus10037083 pacid=23152602 polypeptide=Lus10037083 locus=Lus10037083.g ID=Lus10037083.BGIv1.0 annot-version=v1.0 MKHETFFFLLCFCSLAVCFSIPEPSSSPEKSALLDFKSSLSDPQGVLTTWNSELHHCSWSGITCNSRRRVISLKLPAGASIPCRYAFKLPILGVRMKGLC TSGKLKGKLSPLIGKLSEIMVLSLPFNELGGEIPVEIWGLEELEVLDLEGNSFVGELPRGGFSGLSKLKVLNLGFNRIEGVVPQSFGDLRSLVTLDLRFN KFHGKVPAGVYQFKHLSLDGNNLTRDKFDQKSSGSSNARSLIADTSNRKVSPGSVHVSIRYDDASGAATTTSSRDLLENNTTMDEAGASHGLSPIEIASV ASASAIVSVLIVLVVLFFYMRKWAPNSKVQVSEPKDIIEFVNIGVPLLYENIVLATANFSTRNCIGNGGFGATYKAEIAPGTLVAVKRLAVGRFHQGVQQ FHAEIKALGRVRHPNLVTLVGYHASETEMFLIYNYLAGGNLEAFIRGRSAPTVQWKILHKIALDIARALTYLHDQCAPRILHRDVKPSNILLDDGFNAYL SDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSEKADVYSYGVVLLELISDKKALDPSFSSQENGFNIVSWACMLLRHGRAKEVFTAGLWESSPH DDLVEMLHLAITCTDDTLSTRPTMKNVLQRLRQIRPSKPHGAPAPGSPAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10037083 [exp]	0	1
					Lus10008157 [exp]	1.7	0.8075
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10030472 [exp]	1.7	0.8396
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10001081 [exp]	4.5	0.8395
					Lus10028245 [exp]	7.0	0.7789
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10027807 [exp]	8.3	0.7514
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10035059 [exp]	16.2	0.7871
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Lus10042820 [exp]	18.8	0.8064
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10001507 [exp]	19.6	0.7058
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033209 [exp]	23.7	0.7359
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10026607 [exp]	28.9	0.7345

Compare expression of checked genes

Lus10037083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.