Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13740 167 / 5e-50 AFP2 ABI five binding protein 2 (.1) AT3G29575 156 / 5e-47 AFP3 ABI five binding protein 3 (.1.3.4) AT1G69260 142 / 3e-40 AFP1 ABI five binding protein (.1) AT3G07250 97 / 1e-22 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT3G02140 91 / 4e-21 AFP4, TMAC2 TWO OR MORE ABRES-CONTAINING GENE 2, ABI FIVE BINDING PROTEIN 4, AFP2 (ABI five-binding protein 2) family protein (.1) AT4G28910 64 / 2e-11 NINJA novel interactor of JAZ (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036898 [exp] 400 / 2e-142 AT1G69260 200 / 2e-62 ABI five binding protein (.1) Lus10004645 [exp] 205 / 1e-64 AT1G13740 233 / 2e-74 ABI five binding protein 2 (.1) Lus10026667 [exp] 196 / 3e-61 AT1G13740 237 / 5e-76 ABI five binding protein 2 (.1) Lus10022764 [exp] 106 / 9e-27 AT3G29575 113 / 2e-29 ABI five binding protein 3 (.1.3.4) Lus10003145 [exp] 103 / 8e-26 AT3G29575 112 / 4e-29 ABI five binding protein 3 (.1.3.4) Lus10043236 [exp] 62 / 6e-11 AT4G28910 265 / 9e-84 novel interactor of JAZ (.1.2.3) Lus10011116 [exp] 62 / 1e-10 AT4G28910 259 / 1e-81 novel interactor of JAZ (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157900 [exp] 161 / 1e-47 AT1G13740 229 / 1e-72 ABI five binding protein 2 (.1) Potri.008G096500 [exp] 160 / 4e-47 AT1G13740 240 / 6e-77 ABI five binding protein 2 (.1) Potri.017G094500 [exp] 110 / 3e-28 AT1G13740 169 / 1e-49 ABI five binding protein 2 (.1) Potri.004G120600 [exp] 105 / 2e-26 AT1G13740 176 / 5e-52 ABI five binding protein 2 (.1) Potri.006G162900 [exp] 72 / 3e-14 AT4G28910 307 / 1e-99 novel interactor of JAZ (.1.2.3) Potri.018G085100 [exp] 61 / 2e-10 AT4G28910 324 / 3e-106 novel interactor of JAZ (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07897 [flax] [poplar] EAR Ethylene-responsive binding factor-associated repression
Representative CDS sequence Show only first row Show all	>Lus10037084 pacid=23152474 polypeptide=Lus10037084 locus=Lus10037084.g ID=Lus10037084.BGIv1.0 annot-version=v1.0 ATGGATCAAACTGAAGGAACAGTGAACAGAAAAATGGAGAGTCTTTCTCTGGAGATAAGCAGCTGCCCGAGGGATCTCCTGGCGAGATTAGGCGGCGGCA GTCATAAGAAGAAACGAAGAGCGACAGGAGAAGAAGAAGGAAGTGAATCAGAGGAAATTGAGCTGAGTCTAGGGTTGTCTTTAGGAGGAAGATTCGGAGT CGACAAGCTCGTTCGATCTTCGTCGATACCGGAGAGGAGGGTGGTGGAGAGTTCGTATCCTCTGCTGACTAGGACTTCGTCTTTGCCGGCGGAGACGGAG GAGGAGTGGATGAAGAGGAAGCAAATGCAGAGCTTTACGACGAAGCAGGCCACCAAAAGGCGCCGGACCGAGAAGCAGAGTGATCATTCTTCGAAAATGG TTCAAGGATCAAGAAATGGTGGCGAATCGAACAGCCACACGAGCAACCAATCGTCGCAAGACCAACGCAGCCAGGCCGGTTGTTGCCCTCCCGTCACAAA GACTCGCCAAAACCCTGGGAGAATCCTCACCTATTCTTCTGAGGACAAGAAGAGGGGCAAGGGAGTCGCGGTGGAAGATATGCCCTGTGTTTTTACGGTA GGGGACAGTCCTAATGGAAGACGAGTCGAAGGGATCCTGTACAAGTACGGCAGAGGTAAGGAAGTGAGGATAATGTGTGTATGCCACGGCAGCTTCCTGT CCCCTGCCGAATTCGTCGAGCATGCTGGTGGCACCAATGTCGACCACCCTCTTAGGCACATTGTTGTTAGCCCTTCCTTTCTGTAG
AA sequence Show only first row Show all	>Lus10037084 pacid=23152474 polypeptide=Lus10037084 locus=Lus10037084.g ID=Lus10037084.BGIv1.0 annot-version=v1.0 MDQTEGTVNRKMESLSLEISSCPRDLLARLGGGSHKKKRRATGEEEGSESEEIELSLGLSLGGRFGVDKLVRSSSIPERRVVESSYPLLTRTSSLPAETE EEWMKRKQMQSFTTKQATKRRRTEKQSDHSSKMVQGSRNGGESNSHTSNQSSQDQRSQAGCCPPVTKTRQNPGRILTYSSEDKKRGKGVAVEDMPCVFTV GDSPNGRRVEGILYKYGRGKEVRIMCVCHGSFLSPAEFVEHAGGTNVDHPLRHIVVSPSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10037084 [exp]	0	1
AT4G17900			PLATZ transcription factor fam...		Lus10040082 [exp]	3.5	0.9058
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10023512 [exp]	4.0	0.9094
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10012550 [exp]	4.9	0.9029
AT5G54940			Translation initiation factor ...		Lus10021532 [exp]	7.5	0.9043
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	8.1	0.9150
AT1G67910			unknown protein		Lus10034901 [exp]	9.6	0.8739
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	12.0	0.8887
AT3G14830			unknown protein		Lus10005552 [exp]	13.0	0.8947
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10022382 [exp]	13.6	0.9031
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016297 [exp]	14.5	0.8761

Compare expression of checked genes

Lus10037084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.