Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66200 355 / 8e-119 ARO2 armadillo repeat only 2 (.1) AT4G34940 342 / 2e-113 ARO1 armadillo repeat only 1 (.1) AT4G36030 289 / 7e-93 ARO3 armadillo repeat only 3 (.1) AT3G26600 117 / 4e-29 ARO4 armadillo repeat only 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028452 [exp] 360 / 2e-120 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10041905 [exp] 357 / 3e-119 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10025059 [exp] 348 / 3e-115 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10036897 [exp] 224 / 2e-69 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10004620 [exp] 125 / 3e-32 AT3G26600 661 / 0.0 armadillo repeat only 4 (.1) Lus10026695 [exp] 125 / 6e-32 AT3G26600 656 / 0.0 armadillo repeat only 4 (.1) Lus10034485 [exp] 104 / 4e-28 AT5G66200 130 / 6e-37 armadillo repeat only 2 (.1) Lus10027837 [exp] 84 / 5e-18 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10038699 [exp] 43 / 0.0003 AT3G54850 599 / 0.0 plant U-box 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G113000 [exp] 368 / 1e-123 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.004G172500 [exp] 345 / 1e-114 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.009G131900 [exp] 333 / 5e-110 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1) Potri.010G045500 [exp] 120 / 2e-30 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1) Potri.015G082800 [exp] 115 / 2e-28 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1) Potri.009G165900 [exp] 48 / 7e-06 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.013G052500 [exp] 44 / 7e-05 AT3G07360 415 / 3e-142 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.002G248600 [exp] 43 / 0.0002 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.019G029500 [exp] 42 / 0.0004 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.002G224400 [exp] 41 / 0.0007 AT2G05810 459 / 3e-156 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10037086 pacid=23152284 polypeptide=Lus10037086 locus=Lus10037086.g ID=Lus10037086.BGIv1.0 annot-version=v1.0 ATGGCGGACTGGGCGAAACTGGTGTTAGCAAAGCCAATCCAACTAGTAGACCACATCATCAAATCCGTGGATGAAGTCTTCGCATTCAAGAATGAGCTCT CCGAGGTGAAATCCAAGTCGGAGAAGCTCGCTTCCTTACTCCGACAAGTCGCAGGCGCGAGCCACGACCTCTACCCGCGACCCACCTGCCGTGTACTTCA CGCCACGGAGCAGGTACTGGATACGGCCCTCACTCTAGTAGTCAAGTGTCGAGCCGAAGGTTTAATGAACAGGATCCTCACCATAATCCCATCATCCGAG TTCCGAGTGGCGGACCAGCTCGAGAACTCAATCCGCGACATTTCCTGGCTCCTCCGCGTCTCCGCTGGACTCTCCCCCACCGACGCCACCCTCTATCTGA TATGGGAGCAGGTTGCGATTCTCGACACCAGTTCGCTAGATAACCGGTCTAACGCTGCAGCTTCGCTCGTTTCATTAATGAGCGATGATGACCGTACCTG CTGTAAGTTGATAATTGAAGAAGGAGGGGTTCGTCCGCTGCTGAGATTGGTCGAGGAAGGGGAACCGGACGGTCAGGAGAACGCGGCAAGAGCAATCGGG TTACTAGGTCGAGACCCTGGAAGCGTGGAGCACATGGTTCAGGCTGGGGTTTGCTCAGTGTTTGCGGAAATCCTCAAAGGTTGCTTGCCGGTGAAGATTC AGGCAGTCGTGGCGTGGGCTGTTTCAGAGCTTGCTGCTAGTTACCCGAAATGTCAAAACCTGTTCGCTCGTCACGATATAATCCGTTCGTTGGTCGCTCA TACTGCGTTCGAGACTGTTGAAGAACACAGAAGGTATACAATCGTTAGACACAAGGCCAATGTTGTTCCTAGTAGTAATTTTGATGCAACTATGAGGCAA ATGCAGCAAGAGCACTTGGGAACCTAG
AA sequence Show only first row Show all	>Lus10037086 pacid=23152284 polypeptide=Lus10037086 locus=Lus10037086.g ID=Lus10037086.BGIv1.0 annot-version=v1.0 MADWAKLVLAKPIQLVDHIIKSVDEVFAFKNELSEVKSKSEKLASLLRQVAGASHDLYPRPTCRVLHATEQVLDTALTLVVKCRAEGLMNRILTIIPSSE FRVADQLENSIRDISWLLRVSAGLSPTDATLYLIWEQVAILDTSSLDNRSNAAASLVSLMSDDDRTCCKLIIEEGGVRPLLRLVEEGEPDGQENAARAIG LLGRDPGSVEHMVQAGVCSVFAEILKGCLPVKIQAVVAWAVSELAASYPKCQNLFARHDIIRSLVAHTAFETVEEHRRYTIVRHKANVVPSSNFDATMRQ MQQEHLGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	0	1
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	1.0	0.9153
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	3.5	0.8420
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10032580 [exp]	4.9	0.8359
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	5.5	0.8043
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10003095 [exp]	5.7	0.7909
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10018636 [exp]	5.7	0.7762
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	7.3	0.8005
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10001584 [exp]	8.5	0.8125
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10033482 [exp]	8.9	0.7022
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10033599 [exp]	10.5	0.7797

Compare expression of checked genes

Lus10037086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.