Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66200 201 / 5e-61 ARO2 armadillo repeat only 2 (.1) AT4G34940 178 / 2e-52 ARO1 armadillo repeat only 1 (.1) AT4G36030 176 / 1e-51 ARO3 armadillo repeat only 3 (.1) AT3G26600 109 / 1e-27 ARO4 armadillo repeat only 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036897 [exp] 271 / 2e-89 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1) Lus10028452 [exp] 248 / 1e-78 AT5G66200 965 / 0.0 armadillo repeat only 2 (.1) Lus10041905 [exp] 244 / 4e-77 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Lus10027837 [exp] 177 / 1e-53 AT4G34940 574 / 0.0 armadillo repeat only 1 (.1) Lus10027838 [exp] 172 / 1e-53 AT4G34940 396 / 2e-135 armadillo repeat only 1 (.1) Lus10025059 [exp] 177 / 9e-52 AT4G34940 973 / 0.0 armadillo repeat only 1 (.1) Lus10005065 [exp] 127 / 3e-37 AT4G34940 239 / 2e-76 armadillo repeat only 1 (.1) Lus10004620 [exp] 98 / 1e-23 AT3G26600 661 / 0.0 armadillo repeat only 4 (.1) Lus10026695 [exp] 96 / 6e-23 AT3G26600 656 / 0.0 armadillo repeat only 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G113000 [exp] 218 / 2e-67 AT5G66200 966 / 0.0 armadillo repeat only 2 (.1) Potri.009G131900 [exp] 190 / 6e-57 AT4G34940 986 / 0.0 armadillo repeat only 1 (.1) Potri.004G172500 [exp] 189 / 9e-57 AT4G34940 1020 / 0.0 armadillo repeat only 1 (.1) Potri.010G045500 [exp] 121 / 9e-32 AT3G26600 632 / 0.0 armadillo repeat only 4 (.1) Potri.015G082800 [exp] 119 / 5e-31 AT3G26600 610 / 0.0 armadillo repeat only 4 (.1) Potri.013G007300 [exp] 40 / 0.0005 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037087 pacid=23152554 polypeptide=Lus10037087 locus=Lus10037087.g ID=Lus10037087.BGIv1.0 annot-version=v1.0 ATGGAGTTGACAGCAGTAGCGGAAGAGAATTCTGATCTTAGAAAAGCAGCATTCAAACCTAATGCTCCTGTTTGCAAAGCTCTGGTTGATCAATTGCTGA GAATCATTATTGAGAAACAGGATTATACGGAGCTTCTTCTGATCGTACCGCGTATCAAATCAATCGGCAATTTGGCGCGAACATTTAGAGCTACGGAAAC CCTGATGATTATCCCTGCTCTGGTTGATCTCCTGGACGAGAAGGAATTGCCTGAAGTTTCGAGGGAGGTATCGGTGGCTTTGACTAAGTTTGCCCGTTCT GATAACTATCTCCATCTCGACCACTCCAAGGGAATCGTCGCTGCCGGAGGTGCAAAGCGTTTGGTCCAGCTTGTGTACTTTGGTGAAGAATTCGTTCAGG TTTCGGCTCTGATACTTCTTTGTTACATCGCTTTGCACGTTCCGGATTGCGAGGAGGTCGCTGAGGCAGCAGTGCTGGCTGCCATGGAATGGGCTTGCGG CCAAGATTTCATCACTCTGAATGAAATGCTGGATCCCCTGCTTCCTGAAGCCAGGAACAGATTGGGAATTACTCAGGTTAAGTGTCAGTTGAATACAAAG GTGATGGTGAATATGTAA
AA sequence Show only first row Show all	>Lus10037087 pacid=23152554 polypeptide=Lus10037087 locus=Lus10037087.g ID=Lus10037087.BGIv1.0 annot-version=v1.0 MELTAVAEENSDLRKAAFKPNAPVCKALVDQLLRIIIEKQDYTELLLIVPRIKSIGNLARTFRATETLMIIPALVDLLDEKELPEVSREVSVALTKFARS DNYLHLDHSKGIVAAGGAKRLVQLVYFGEEFVQVSALILLCYIALHVPDCEEVAEAAVLAAMEWACGQDFITLNEMLDPLLPEARNRLGITQVKCQLNTK VMVNM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	0	1
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	1.0	0.9153
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10035704 [exp]	2.2	0.7932
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	2.4	0.8338
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	3.7	0.8397
AT1G27170			transmembrane receptors;ATP bi...		Lus10007823 [exp]	4.9	0.7821
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	5.7	0.8031
AT4G32340			Tetratricopeptide repeat (TPR)...		Lus10002013 [exp]	6.0	0.7684
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10033599 [exp]	6.5	0.7872
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	8.4	0.7858
AT1G28440		HSL1	HAESA-like 1 (.1)		Lus10018636 [exp]	10.2	0.7540

Compare expression of checked genes

Lus10037087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.