Plant FIBer expression Database

Lus10037088 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G26470 115 / 1e-33 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036897
[exp]
149 / 2e-43 AT5G66200 261 / 2e-79 armadillo repeat only 2 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G159200
[exp]
153 / 9e-49 AT1G26470 144 / 3e-45 unknown protein
Potri.008G095100
[exp]
144 / 3e-45 AT1G26470 141 / 2e-44 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07904 Eaf7 Chromatin modification-related protein EAF7
Representative CDS sequence
>Lus10037088 pacid=23152248 polypeptide=Lus10037088 locus=Lus10037088.g ID=Lus10037088.BGIv1.0 annot-version=v1.0
ATGGACGACGGTAAAAGCAACGGCAAAGGCAGAGAAGAGGAACAAGATGGAGTCTCCGTACACTCTCCTTGCAAAGCTCCTCCATCCTCTGCTTCCTCTC
TCCCTAAGGAGCAAACGCAGGTGGAACTAGAGCTCAGGCTGCTCGAAGCTCTGGCGATCTACCCCCCTGTCAAACTGCGAGGCAATTCTTTATCCATGGA
TTTGGTGAAGATAATAATGTGGTCTTGTTGCGGTTATGCAGGGATGCATCGTCATTTCGTTTTGTATGGTCTGATGGAATTCCTGCGGAGAAGGTTCTTC
GATCGGTACTTCTCTCCTGACGAGGTCACTCAGCTGCTGGAACGATTCTACAACATTGAAATGCTGAAACCTGATGACGAAGAATCGGAGATACTGAGTC
AAGAGGAAGACTTCAGCTTGCCTCAGAGCTACTTTGTCAAGGAGGAATGA
AA sequence
>Lus10037088 pacid=23152248 polypeptide=Lus10037088 locus=Lus10037088.g ID=Lus10037088.BGIv1.0 annot-version=v1.0
MDDGKSNGKGREEEQDGVSVHSPCKAPPSSASSLPKEQTQVELELRLLEALAIYPPVKLRGNSLSMDLVKIIMWSCCGYAGMHRHFVLYGLMEFLRRRFF
DRYFSPDEVTQLLERFYNIEMLKPDDEESEILSQEEDFSLPQSYFVKEE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G26470 unknown protein Lus10037088
[exp]
0 1
AT2G29040 Exostosin family protein (.1) Lus10004967
[exp]
2.0 0.6323
AT5G12380 ANNAT8 annexin 8 (.1) Lus10010666
[exp]
20.9 0.6191
AT5G51880 2-oxoglutarate (2OG) and Fe(II... Lus10015014
[exp]
21.8 0.6318
AT5G25760 PEX4, UBC21 ubiquitin-conjugating enzyme 2... Lus10011695
[exp]
21.8 0.6219
AT3G26922 F-box/RNI-like superfamily pro... Lus10016192
[exp]
49.6 0.5936
AT3G27050 unknown protein Lus10010600
[exp]
65.0 0.5368
AT2G38280 ATAMPD, FAC1 EMBRYONIC FACTOR1, ADENOSINE 5... Lus10005043
[exp]
82.0 0.5852
AT1G73040 Mannose-binding lectin superfa... Lus10006866
[exp]
86.2 0.5829
AT5G65940 CHY1 beta-hydroxyisobutyryl-CoA hyd... Lus10038717
[exp]
94.3 0.5767
AT4G29660 EMB2752 embryo defective 2752 (.1) Lus10032908
[exp]
140.6 0.5410

Lus10037088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.