Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26480 134 / 1e-39 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT2G42590 120 / 3e-34 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3) AT1G78300 109 / 7e-30 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT1G34760 107 / 4e-29 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) AT1G22300 107 / 6e-29 14-3-3EPSILON, GF14EPSILON, GRF10 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, general regulatory factor 10 (.1.2.3) AT4G09000 107 / 9e-29 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT5G38480 105 / 3e-28 RCI1, GRF3 general regulatory factor 3 (.1.2) AT3G02520 105 / 4e-28 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT5G16050 104 / 9e-28 GF14UPSILON, GRF5 general regulatory factor 5 (.1) AT1G35160 103 / 2e-27 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036896 [exp] 162 / 3e-50 AT1G26480 462 / 5e-167 general regulatory factor 12 (.1) Lus10026660 [exp] 147 / 1e-44 AT1G26480 457 / 7e-165 general regulatory factor 12 (.1) Lus10004652 [exp] 144 / 4e-43 AT1G26480 457 / 4e-165 general regulatory factor 12 (.1) Lus10020705 [exp] 114 / 3e-31 AT2G42590 399 / 2e-141 general regulatory factor 9 (.1.2.3) Lus10029835 [exp] 114 / 3e-31 AT2G42590 417 / 1e-148 general regulatory factor 9 (.1.2.3) Lus10033609 [exp] 115 / 6e-31 AT2G42590 410 / 9e-144 general regulatory factor 9 (.1.2.3) Lus10017650 [exp] 109 / 6e-30 AT2G42590 420 / 5e-150 general regulatory factor 9 (.1.2.3) Lus10036481 [exp] 109 / 1e-29 AT1G78300 481 / 1e-174 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10010349 [exp] 108 / 1e-29 AT1G78300 454 / 5e-164 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095000 [exp] 137 / 9e-41 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.010G159300 [exp] 135 / 4e-40 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1) Potri.001G392200 [exp] 117 / 8e-33 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.011G110900 [exp] 116 / 2e-32 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.002G097500 [exp] 113 / 2e-31 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.005G164500 [exp] 112 / 5e-31 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) Potri.002G099800 [exp] 108 / 2e-29 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.005G162400 [exp] 106 / 8e-29 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.017G113300 [exp] 105 / 4e-28 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.004G101700 [exp] 102 / 4e-27 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10037089 pacid=23152533 polypeptide=Lus10037089 locus=Lus10037089.g ID=Lus10037089.BGIv1.0 annot-version=v1.0 ATGAACTCCCCTGAACGAGCCTGCCACTTGGCGAAGCAAGCCTTTGATGAGGCCATTGCTGAGCTGGATACCTTGAATGAGGAGTCCTACAAAGATAGCA CCTTGATCATGCAGCTGTTGAGAGACAACCTCACTCTCTGGACTTCTGACTTGCCTGAAGATGGAGGTGATGATAACTTGAAAGGTGAAGAAGGTGGTGC CAAACCTACAGAGCCAGGAACTGCAGGGCTAATCCGTTCCCGATTAGGACATAAACCAGAAAGGGTTAACGGTAAAACTGGACATCATGTCATTGTTGTT AAAGCATCTATTTATATATACAGATATGGGGATAGCTACAGTTTCGGAGGAGGGATCATCGAAGAGCACCTCGAATTTAACGAGCAAGATCAAAAAGAGA AGAGTCGAGGAGTACACAATTCGATTCAACCGAACTATATGAGACCGGAAACGTACTACTCTGATCCAACTAACTACCTCTGA
AA sequence Show only first row Show all	>Lus10037089 pacid=23152533 polypeptide=Lus10037089 locus=Lus10037089.g ID=Lus10037089.BGIv1.0 annot-version=v1.0 MNSPERACHLAKQAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDDNLKGEEGGAKPTEPGTAGLIRSRLGHKPERVNGKTGHHVIVV KASIYIYRYGDSYSFGGGIIEEHLEFNEQDQKEKSRGVHNSIQPNYMRPETYYSDPTNYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037089 [exp]	0	1
					Lus10033601 [exp]	1.0	0.9433
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Lus10011440 [exp]	1.4	0.9122
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10026046 [exp]	3.0	0.9053
AT1G18010			Major facilitator superfamily ...		Lus10043370 [exp]	3.9	0.8972
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10028105 [exp]	5.1	0.8721
					Lus10043057 [exp]	5.8	0.8540
					Lus10014515 [exp]	5.9	0.8932
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	6.3	0.8508
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	6.7	0.8852
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10034565 [exp]	8.4	0.8786

Compare expression of checked genes

Lus10037089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.