Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26480 240 / 8e-81 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT1G34760 216 / 2e-71 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) AT1G22300 209 / 4e-69 14-3-3EPSILON, GF14EPSILON, GRF10 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, general regulatory factor 10 (.1.2.3) AT2G42590 202 / 3e-66 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3) AT4G09000 190 / 4e-61 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT5G38480 184 / 5e-59 RCI1, GRF3 general regulatory factor 3 (.1.2) AT1G35160 184 / 1e-58 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT1G78300 183 / 1e-58 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT3G02520 182 / 3e-58 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT5G65430 172 / 1e-54 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036896 [exp] 281 / 3e-97 AT1G26480 462 / 5e-167 general regulatory factor 12 (.1) Lus10026660 [exp] 265 / 1e-90 AT1G26480 457 / 7e-165 general regulatory factor 12 (.1) Lus10004652 [exp] 264 / 4e-90 AT1G26480 457 / 4e-165 general regulatory factor 12 (.1) Lus10017650 [exp] 204 / 1e-66 AT2G42590 420 / 5e-150 general regulatory factor 9 (.1.2.3) Lus10001894 [exp] 203 / 2e-66 AT2G42590 405 / 1e-144 general regulatory factor 9 (.1.2.3) Lus10036471 [exp] 203 / 3e-66 AT1G26480 406 / 7e-145 general regulatory factor 12 (.1) Lus10029835 [exp] 198 / 3e-64 AT2G42590 417 / 1e-148 general regulatory factor 9 (.1.2.3) Lus10033609 [exp] 202 / 5e-64 AT2G42590 410 / 9e-144 general regulatory factor 9 (.1.2.3) Lus10020705 [exp] 198 / 5e-64 AT2G42590 399 / 2e-141 general regulatory factor 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G095000 [exp] 251 / 4e-85 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.010G159300 [exp] 247 / 1e-83 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1) Potri.002G097500 [exp] 224 / 6e-75 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.005G164500 [exp] 224 / 1e-74 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) Potri.001G392200 [exp] 218 / 4e-72 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.011G110900 [exp] 216 / 1e-71 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.004G101700 [exp] 196 / 7e-64 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.017G113300 [exp] 191 / 2e-61 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.005G162400 [exp] 189 / 9e-61 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.002G099800 [exp] 185 / 2e-59 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10037090 pacid=23152416 polypeptide=Lus10037090 locus=Lus10037090.g ID=Lus10037090.BGIv1.0 annot-version=v1.0 ATGTCGTCGACCGAGAAGGAGAGGGACAGCCACGTCTACATGGCCAAGCTCTCCGAACAGGCTGAGCGTTATGACGAAATGGTGGAGTGCATGAAGAAGG TGGCGAAGCTGGACTGCGAGCTGACGGTGGAGGAGAGGAACCTGCTGTCGGTAGGGTACAAGAACGTGATCGGAGCACGAAGGGCATCGTGGAGGATCAT GTCCTCGATCGAGCAAAAGGAAGAGTCCAAAGGGAACGAGCAGAACGTGAAGCTGATCAAAGGATACCGCAACAAGGTTGAAGATGAGCTGGCCAAGATC TGTCACGATATCCTCGACATCATCGACAAGCACCTCATCCCTTCCTCCGCCTCGGGGGAAGCCACCGTCTTCTACTACAAAATGAAAGGAGACTATTTCC GATATCTGGCCGAGTTCAAGACCGAATCAGAGAGGAAGGATGCAGCAGAGCAATCCCTCAAGGGTTACGAGGTACATTTCGGAACGATGGGTTTTTCGTA A
AA sequence Show only first row Show all	>Lus10037090 pacid=23152416 polypeptide=Lus10037090 locus=Lus10037090.g ID=Lus10037090.BGIv1.0 annot-version=v1.0 MSSTEKERDSHVYMAKLSEQAERYDEMVECMKKVAKLDCELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEQNVKLIKGYRNKVEDELAKI CHDILDIIDKHLIPSSASGEATVFYYKMKGDYFRYLAEFKTESERKDAAEQSLKGYEVHFGTMGFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10037090 [exp]	0	1
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019178 [exp]	1.4	0.8112
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10022660 [exp]	3.0	0.6830
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10019668 [exp]	3.7	0.7271
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10029233 [exp]	12.0	0.6777
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	15.7	0.6666
AT3G19090			RNA-binding protein (.1)		Lus10027925 [exp]	16.2	0.6438
					Lus10039384 [exp]	16.4	0.6437
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Lus10010098 [exp]	21.4	0.6795
					Lus10014629 [exp]	32.2	0.6230
					Lus10039943 [exp]	35.0	0.6164

Compare expression of checked genes

Lus10037090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.