Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13900 868 / 0 Purple acid phosphatases superfamily protein (.1) AT2G03450 866 / 0 PAP9, ATPAP9 purple acid phosphatase 9 (.1) AT5G50400 216 / 2e-61 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) AT4G24890 207 / 3e-58 ATPAP24, PAP24 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) AT1G13750 205 / 2e-57 Purple acid phosphatases superfamily protein (.1) AT3G52780 121 / 2e-29 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G52820 119 / 1e-28 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 108 / 6e-25 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G20500 106 / 2e-24 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT4G13700 105 / 6e-24 ATPAP23, PAP23 purple acid phosphatase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004661 [exp] 931 / 0 AT1G13900 860 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10026652 [exp] 926 / 0 AT1G13900 875 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10036894 [exp] 439 / 2e-152 AT1G13900 266 / 1e-85 Purple acid phosphatases superfamily protein (.1) Lus10039565 [exp] 221 / 2e-63 AT5G50400 362 / 6e-117 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10016356 [exp] 204 / 3e-57 AT4G24890 332 / 7e-106 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, purple acid phosphatase 24 (.1) Lus10024179 [exp] 204 / 5e-57 AT5G50400 331 / 3e-105 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10019771 [exp] 203 / 8e-57 AT5G50400 317 / 4e-100 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10037079 [exp] 193 / 2e-53 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1) Lus10036904 [exp] 192 / 7e-53 AT1G13750 928 / 0.0 Purple acid phosphatases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160500 [exp] 956 / 0 AT1G13900 903 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.003G202200 [exp] 222 / 1e-63 AT5G50400 359 / 8e-116 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.001G023400 [exp] 213 / 4e-60 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.012G097400 [exp] 199 / 2e-55 AT5G50400 947 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.015G095900 [exp] 198 / 6e-55 AT5G50400 838 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Potri.010G158400 [exp] 196 / 2e-54 AT1G13750 962 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.010G158250 [exp] 196 / 3e-54 AT1G13750 967 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.008G096000 [exp] 184 / 4e-50 AT1G13750 927 / 0.0 Purple acid phosphatases superfamily protein (.1) Potri.011G138200 [exp] 110 / 1e-25 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 100 / 2e-22 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10037091 pacid=23152532 polypeptide=Lus10037091 locus=Lus10037091.g ID=Lus10037091.BGIv1.0 annot-version=v1.0 ATGAAATTCTTCGTAATCATCTCCTCAATCCTCCTCCTCTCCCTTCTCTCCGAACCCGCCTCCTCAAAACCGACCGTCAACGTCACTCCTCCACTCCTCA ACCGATCCGGCGACATCGTCACCGTCGCCTGGTCAAATGTCGACTCGCCGTCGAAGCTCGACTGGCTCGGAATCTACTCCCCTCCTTCTTCCCCTCACGA CCACTTCATCGGGTACAAGTTCCTATCTGCCTCTCCCGGGTGGGAATCCGGGTCGGGTTCCCTCTCCATACCAATCACCAACCTCCGATCCAACTACTCG TTCCGGATCTTCCGGTGGACGGAGGATCAGATCGACGCCAAGCTCCGCGACCAGGACGAGAACCCGCTTCCGGGGGCGCAGCACCTGCTAGCGGAGTCTG ATGGAGTCGTCAGGTTCGGGTTGGGGAATGGGCCGGAGCAGATCCATCTCGCGTTTACGGATCGAGCTGACGAGATGAGGGTGATGTTCTTGACTGGAGA TGGCGATGAGAGGAAGGTCCGGTGGGGGGAGAACGACGGCGCGTGGAGTAAGGAAGCGGCGGCGCGTGTGGGGAGATATGAAAAGGAGGATATGTGTGAT TCGCCGGCGAATAGCTCTGTTGGGTGGAGAGATCCCGGTTGGATTCATGATGGGGTAATGAAGGATTTGAAGCAAGGTTTCAGATACTATTACCAGGTTG GAAGTGACTCAAAGGGATGGAGTAAAGCTCAAACCTTTGTGTCAAGGAACGAAGATTCAGACGAGACAACAGCATTCCTATTTGGCGACATGGGAACATC AGCACCATATGCAACATTCATCCGTACGCAATCCGAAAGCGTATCAACAGTGAACTTGATCCTCCGTGATATGGAGAGACTCGGGGAGAAGCCAGCATTT GTTTCCCACATTGGTGACATAAGCTACGCAAGGGGGTATTCATGGATATGGGACCATTTCTTCACACAAATTGAGCCGATCTCTTCGAGATTGGCATACC ATGTATGCATCGGTAACCACGAGTATGACTGGCCGGCACAGCCGTGGAAGCCTGACTGGTCTTCAGGAACCTACGGCACTGATGGAGGTGGTGAATGTGG AGTCCCTTACAGCCTAAAGTTCAACATGCCCGGAAACTCCTCCGAACCAACCGGGACTCTAGCACCGGAAACTCGGAACCTCTACTACTCGTTCGATTTC GGGGCGGTGCATTTCGTTTACATCTCAACTGAGACCAACTTTGTCCGTGGGAGTAAACAGTACGAGTTCATACAGAAGGACCTCAAATCGGTCAACCGGA GCAAGACCCCTTTCGTGGTGCTCCAAGGGCATCGGCCAATGTACACCACAAGCAACGAGGTTAGGGATGCTCCGATGAGGCAGAAGATGCAGGAGCACTT GGAGCCCTTACTAGTGACCTACAATGTCACAATGGCTCTGTGGGGACATGTCCACAGGTATGAGAGGTTCTGTCCGTTGAATAACTTCGAATGCGGCCAG ACATGGAAAGGGTTTCCGGTCCACGTTGTGATTGGGATGGCCGGACAAGATTGGCAGCCTACTTGGGAACCTAGACCGGAACACCCGGACATGCCGGTCT TCCCACAGCCAAAACGGTCCATGTATAGAGGGGGAGAGTTCGGGTACACGAGATTGACTGCCACGAAGGAGAAGCTCACGTTCTCATATGTGGGGAACCA CGATGGACAAGTGCACGACATGTTCGAGATACTCGCATCGGGGGAGGTTCTGAGTGGAAACATTGCCAATGGCTCGATGGGAGGAGCAAAAGGTTCGGAA TTCAATCACCATTCTATGCTCTTCTCGAAGTATGTTAAGGGTGCAAGCATTCTGGTGTTGGGTGCTTTCATCGGTTACATTGTCGGGTTCCTTTCGCATG CCCGGAAGAAGAAGCAGGTCGCGCAGAACGGTGACTGGACTCGAGTTAAAAGCGAAGAGACATGA
AA sequence Show only first row Show all	>Lus10037091 pacid=23152532 polypeptide=Lus10037091 locus=Lus10037091.g ID=Lus10037091.BGIv1.0 annot-version=v1.0 MKFFVIISSILLLSLLSEPASSKPTVNVTPPLLNRSGDIVTVAWSNVDSPSKLDWLGIYSPPSSPHDHFIGYKFLSASPGWESGSGSLSIPITNLRSNYS FRIFRWTEDQIDAKLRDQDENPLPGAQHLLAESDGVVRFGLGNGPEQIHLAFTDRADEMRVMFLTGDGDERKVRWGENDGAWSKEAAARVGRYEKEDMCD SPANSSVGWRDPGWIHDGVMKDLKQGFRYYYQVGSDSKGWSKAQTFVSRNEDSDETTAFLFGDMGTSAPYATFIRTQSESVSTVNLILRDMERLGEKPAF VSHIGDISYARGYSWIWDHFFTQIEPISSRLAYHVCIGNHEYDWPAQPWKPDWSSGTYGTDGGGECGVPYSLKFNMPGNSSEPTGTLAPETRNLYYSFDF GAVHFVYISTETNFVRGSKQYEFIQKDLKSVNRSKTPFVVLQGHRPMYTTSNEVRDAPMRQKMQEHLEPLLVTYNVTMALWGHVHRYERFCPLNNFECGQ TWKGFPVHVVIGMAGQDWQPTWEPRPEHPDMPVFPQPKRSMYRGGEFGYTRLTATKEKLTFSYVGNHDGQVHDMFEILASGEVLSGNIANGSMGGAKGSE FNHHSMLFSKYVKGASILVLGAFIGYIVGFLSHARKKKQVAQNGDWTRVKSEET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13900			Purple acid phosphatases super...		Lus10037091 [exp]	0	1
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	2.0	0.8269
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Lus10027083 [exp]	4.2	0.8071
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10039219 [exp]	5.5	0.7719
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	7.1	0.7908
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007448 [exp]	9.9	0.7687
AT5G64230			unknown protein		Lus10033177 [exp]	10.0	0.7872
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10004925 [exp]	14.0	0.7528
AT3G05010			Protein of unknown function, t...		Lus10040523 [exp]	14.3	0.6918
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	15.0	0.7780
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Lus10031630 [exp]	15.5	0.7830

Compare expression of checked genes

Lus10037091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.