Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13890 294 / 1e-100 ATSNAP30, SNAP30 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) AT5G61210 256 / 4e-85 SNP33, ATSNAP33B, SNAP33 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) AT5G07880 201 / 6e-64 ATSNAP29, SNAP29 ARABIDOPSIS THALIANA SYNAPTOSOMAL-ASSOCIATED PROTEIN SNAP25-LIKE 29, synaptosomal-associated protein SNAP25-like 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036893 [exp] 445 / 8e-160 AT1G13890 335 / 2e-116 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10004660 [exp] 407 / 4e-145 AT1G13890 349 / 4e-122 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10026653 [exp] 272 / 7e-93 AT1G13890 220 / 1e-72 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Lus10003466 [exp] 256 / 7e-85 AT5G61210 379 / 1e-132 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10015738 [exp] 255 / 2e-84 AT5G61210 381 / 1e-133 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Lus10034705 [exp] 253 / 9e-84 AT5G61210 350 / 1e-121 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093800 [exp] 287 / 2e-97 AT1G13890 337 / 4e-117 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1) Potri.015G049000 [exp] 267 / 3e-89 AT5G61210 403 / 3e-142 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.012G066700 [exp] 251 / 6e-83 AT5G61210 360 / 3e-125 soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (.1) Potri.010G160350 [exp] 238 / 4e-78 AT1G13890 266 / 2e-89 soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF12352 [flax] [poplar] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus CL0147 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10037092 pacid=23152447 polypeptide=Lus10037092 locus=Lus10037092.g ID=Lus10037092.BGIv1.0 annot-version=v1.0 ATGTTCGGATTCCTGAAATCAGCTCCGGCCGACCCGCCGAAGCAAGACCCACCGCCACCGGCGAAGAAGGCAGTCGTCTACGACAGCGATTCAGACTCCG ACGACGAGAAACAATGGAGGAAGAAGCCGTCGCGGGCTGCGAAGAAGAATTACGAAAATGGGTTTCAGGATTCGGGAGGGCTGGAGGGGCAGAGTGTTCA GGAGCTGGAGAATTACGCCGTTTATAAAGCGGAGGAGACGACGAACAGTGTGAATAACTGTTTGAAGATCGCCGAGGATATCAGACAAGATGCGTCCAAG ACTCTTGATGTGCTGCATGCTCAGGGGGATCAGATTCAGAGGACCCATGAGATGGCTGTTGACATGGATAAAGATTTGAGCAAGGGAGAAAAGCTCTTGA ACAGCCTTGGTGGGATGTTCTCCAAGCCATGGAAGCCAAAGAAAACCAAAGAGATGAACGGTCCTGTGATTACAGAAGATAAAACATCAAGGACGAATGC AAACCACAGAGCACAGAAGGAGAAGTTGGGGATAGGGAACAAACCGGGGGCCAAATCAGCACCTGTAACTCCTCCTAATGAGCCCAGAACTGCTCTCCAG AAAGTTGATATGGAGAAGGCAAAGCAAGATGATGGACTTTCGGATTTGAGCGACATCTTGGGCGATTTGAAAGGCATGGCTGTTGACATGGGATCCGAAC TTGATAGGCAAAACAAAGCATTGGATCATCTAGATGGTGACATTGATGAGCTAAATTCTCGTGTCAAAGGAGCGAATCAACGTGCTCGCCATTTGCTTTC GAAATAA
AA sequence Show only first row Show all	>Lus10037092 pacid=23152447 polypeptide=Lus10037092 locus=Lus10037092.g ID=Lus10037092.BGIv1.0 annot-version=v1.0 MFGFLKSAPADPPKQDPPPPAKKAVVYDSDSDSDDEKQWRKKPSRAAKKNYENGFQDSGGLEGQSVQELENYAVYKAEETTNSVNNCLKIAEDIRQDASK TLDVLHAQGDQIQRTHEMAVDMDKDLSKGEKLLNSLGGMFSKPWKPKKTKEMNGPVITEDKTSRTNANHRAQKEKLGIGNKPGAKSAPVTPPNEPRTALQ KVDMEKAKQDDGLSDLSDILGDLKGMAVDMGSELDRQNKALDHLDGDIDELNSRVKGANQRARHLLSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10037092 [exp]	0	1
AT1G03700			Uncharacterised protein family...		Lus10032548 [exp]	1.0	0.8261
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10004660 [exp]	1.4	0.7791
AT2G15220			Plant basic secretory protein ...		Lus10001607 [exp]	12.2	0.7298
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10039622 [exp]	12.6	0.7166
AT3G29410		AtTPS25	Terpenoid cyclases/Protein pre...		Lus10038330 [exp]	16.6	0.7567
AT2G37980			O-fucosyltransferase family pr...		Lus10028253 [exp]	18.5	0.7153
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10009705 [exp]	20.1	0.7443
AT5G02910			F-box/RNI-like superfamily pro...		Lus10002819 [exp]	23.4	0.6759
AT4G25800			Calmodulin-binding protein (.1...		Lus10020686 [exp]	24.5	0.7474
AT1G33970			P-loop containing nucleoside t...		Lus10003732 [exp]	25.6	0.7261

Compare expression of checked genes

Lus10037092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.