Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29320 1326 / 0 PHS1 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) AT3G46970 575 / 0 ATPHS2, PHS2 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036892 [exp] 1378 / 0 AT3G29320 1108 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10042688 [exp] 716 / 0 AT3G29320 1422 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10029643 [exp] 633 / 0 AT3G29320 863 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10001200 [exp] 577 / 0 AT3G46970 1377 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Lus10029644 [exp] 531 / 0 AT3G29320 538 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10007546 [exp] 53 / 6e-07 ND 63 / 1e-10
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160200 [exp] 1443 / 0 AT3G29320 1397 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.004G123600 [exp] 721 / 0 AT3G29320 727 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.009G041800 [exp] 583 / 0 AT3G46970 1445 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.004G048600 [exp] 444 / 5e-140 AT3G46970 842 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.008G093901 [exp] 127 / 2e-34 AT3G29320 131 / 8e-37 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00343 [flax] [poplar] Phosphorylase Carbohydrate phosphorylase
Representative CDS sequence Show only first row Show all	>Lus10037093 pacid=23152547 polypeptide=Lus10037093 locus=Lus10037093.g ID=Lus10037093.BGIv1.0 annot-version=v1.0 ATGGCGGATTTCCTCTTCTCCCCAGTCGCTCAATCAGCATCACAACAACCCATCACCTCCCTACATTCTCCCAAGCTCTTCTTCACCAGCTTCACCCCTT CAAGATCCAAACAATTCCTCTTCCCCAGAAGAAGAACAATCAAGCTCTTCTCAGTCAAAAGCATCGCCAGCAGCGACCAGAAGCAGGAGCTCAAAGACCC ATTAACCTCCCTTCAAAATGGCTCTCATTCAGCTCCGAATTCGTCCTCACTCGTTTCCAGCATCAACTACCACGCGGAATTCACGCCGGCATTCTCTCCG GAGCGGTTCGAGCTTCCCAAGGCTTACGTGGCGACTGCTCAGAGCGTCCGAGATTCGCTCATTGTCAACTGGAATACGACTTACGACCACCACGAGAAGA TGAACGTCAAGCAGGCTTATTACCTCTCCATGGAAGCATTGCTGAATGCCATTGGGAATCTGGAGCTATCTGGTGCTTATGCTGATGCTCTCAAAACTTT GGGGTATTCCCTTGAAGATGTAGCCAAGCAGGAGCCAGATGCAGCACTTGGGAATGGAGGATTAGGGAGATTGGCATCTTGCTTTCTGGACTCACTAGCC ACTCTGAACTATCCAGCTTGGGGATATGGACTCAGATACAAATACGGCTTGTTCAAACAGCTGATAACCAAAGATGGCCAAGAGGAAGTTGCAGAAAGTT GGCTCGAGATGGGGAATCCATGGGAGATAGTGCGGAACGATGTTTCATACCCGGTGAAGTTCTACGGGGAAGTGAAGGTGAATCCTGACGGAAGCAAAGA ATGGATTGGAGGAGAAGACATAACAGCTGTGGCTTATGATGTTCCGATTCCGGGGTACAAGACCAAGACAACGTTGAACCTGAGGCTATGGTCCACGAAG CTTGATCCCCAAGCATTCGATCTACATGCTTTCAATACTGGAGATCATGTCAAGGCATATGCTGCCATGAACAATGCTGAAAAGATTTGCTATGTGTTGT ACCCTGGGGACGAGTCGAGAGAAGGGAAGACTCTTAGGTTGAAGCAGCAATACACATTATGTTCTGCATCTCTCCAGGACATAATAGCTAGGTTCGAGAG GAGATCGTGTTTGGGTGACGAAAGTTCATCGAATTGGGAAGAGTTTCCTGAGAAAGTTGCTGTCCAGATGAACGACACTCACCCGACATTGTGCATTCCT GAGCTGATCAGGATTCTTGTGGATGTGAAAGGTTTGAGCTGGAGAGAAGCTTGGAATATCACTAGGAGAACGGTTGCTTATACAAACCACACTGTTTTGC CTGAGGCACTGGAGAAATGGAGTTTGGACCTTGTTCAGGAGTTGCTTCCCAGGCATGTAGAGATCATTAAAATGATTGACGAAGGGCTGATTCACACCAT AATTGAGGAATATGGAGCTGAAGATGTTGACTTGTTGCATAAAAAGCTCAAGGAAATGAGGATTCTTGACAACTTTGAGCTGCCTGAGTCAGTTCTGGAG CTGCTGGTTCCACCAGTAGAAGAAACTCCGAAACTCGAGGAAAAGGAAAAACAAGAATCAGAAGAACAAGAAGAAGAAGAAGAAGAAGTCGATGTAACAG AGGAAACAGAGGAGAGAAATGAGCTGTTTGAGCCAGATACATCGCTGCCGAAGCTGGTGAGAATGGCGAATCTGTGCATCGCCGGGGGGTTTGCTGTGAA TGGAGTAGCAGAGATCCACAGCGAGATCGTAAAGAACGAAGTCTTCAACGATTTCTACAAGCTGTGGCCTGAGAAGTTCCAGAACAAGACCAATGGAGTG ACACCAAGGAGATGGATCCGGTTCTGCAATCCTGATCTCAGCGGCATCATAACGAAATGGACTGGAACTGAAGACTGGATTCTGGACACTGAGAAGCTAG TCAAGCTCAGAAACTTTGCAGACGACGAGGAGCTCCAAACTGAATGGCGACAGTCGAAGAGGAGGAACAAGGCGAAGGTGGCGGATTTTTTGAAGGAGAA GACAGGATACACAGTCAGCCCGGATGCGATGTTTGATGTGCAGGTGAAGAGGATCCATGAGTACAAGAGGCAGCTACTGAACATACTGGGGATCGTTTAC CGGTACAAGAAGATGAAAGAGATGGCAAGTGACGAAGAACGGAGATCGAGTTATGTCCCTAGGGTTTGCATATTTGGTGGCAAGGCTTTTGCTACCTATG TTCAAGCCAAGAGGATTGTCAAGTTCATCACTGATGTTGGTGCCACCATCAACCATGACCCCGAAATCGGCGACCTTCTCAAGGTTGTGTTTGTACCGGA CTACAATGTGAGTGTTGCGGAGGTGCTAATACCAGGAAGCGAGCTCTCGCAGCACATAAGCACGGCGGGGATGGAGGCTAGTGGGACGAGCAACATGAAG TTTTCGATGAACGGATGTGTCCTAATAGGGACATTGGATGGTGCCAATGTGGAGATAAGGGAAGAAGTTGGTGAAGACAACTTCTTCCTCTTTGGTGCCA AAGCACACGAAATAGCTTCCCTAAGGGAAGAACGAACCGATGGCAAGTTCGTTCCGGATCCGAGATTCGAGGAGGTGAAGGAGTACGTAAGGAGCGGGGC GTTCGGATCGTACAACTACAATGAGCTAATGGGATCATTGGAAGGGAATGAAGGGTATGGAAGAGCTGATTACTTCCTTGTTGGTAAAGACTTCCCAAGC TATATTGAGTGCCAAGACCAAGTTGACTTGGCGTACAAGGACCAGAAGAGATGGACGAAGATGTCGATCATGAACACGGCAGGATCGTTCAAGTTCAGCA GTGACAGAACCATTCATCAATATGCTAATGAGATTTGGCGGATCAACCCTCTCCAACTTCCTAATTAA
AA sequence Show only first row Show all	>Lus10037093 pacid=23152547 polypeptide=Lus10037093 locus=Lus10037093.g ID=Lus10037093.BGIv1.0 annot-version=v1.0 MADFLFSPVAQSASQQPITSLHSPKLFFTSFTPSRSKQFLFPRRRTIKLFSVKSIASSDQKQELKDPLTSLQNGSHSAPNSSSLVSSINYHAEFTPAFSP ERFELPKAYVATAQSVRDSLIVNWNTTYDHHEKMNVKQAYYLSMEALLNAIGNLELSGAYADALKTLGYSLEDVAKQEPDAALGNGGLGRLASCFLDSLA TLNYPAWGYGLRYKYGLFKQLITKDGQEEVAESWLEMGNPWEIVRNDVSYPVKFYGEVKVNPDGSKEWIGGEDITAVAYDVPIPGYKTKTTLNLRLWSTK LDPQAFDLHAFNTGDHVKAYAAMNNAEKICYVLYPGDESREGKTLRLKQQYTLCSASLQDIIARFERRSCLGDESSSNWEEFPEKVAVQMNDTHPTLCIP ELIRILVDVKGLSWREAWNITRRTVAYTNHTVLPEALEKWSLDLVQELLPRHVEIIKMIDEGLIHTIIEEYGAEDVDLLHKKLKEMRILDNFELPESVLE LLVPPVEETPKLEEKEKQESEEQEEEEEEVDVTEETEERNELFEPDTSLPKLVRMANLCIAGGFAVNGVAEIHSEIVKNEVFNDFYKLWPEKFQNKTNGV TPRRWIRFCNPDLSGIITKWTGTEDWILDTEKLVKLRNFADDEELQTEWRQSKRRNKAKVADFLKEKTGYTVSPDAMFDVQVKRIHEYKRQLLNILGIVY RYKKMKEMASDEERRSSYVPRVCIFGGKAFATYVQAKRIVKFITDVGATINHDPEIGDLLKVVFVPDYNVSVAEVLIPGSELSQHISTAGMEASGTSNMK FSMNGCVLIGTLDGANVEIREEVGEDNFFLFGAKAHEIASLREERTDGKFVPDPRFEEVKEYVRSGAFGSYNYNELMGSLEGNEGYGRADYFLVGKDFPS YIECQDQVDLAYKDQKRWTKMSIMNTAGSFKFSSDRTIHQYANEIWRINPLQLPN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10037093 [exp]	0	1
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10036892 [exp]	1.0	0.9380
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10042051 [exp]	7.0	0.9041
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Lus10001378 [exp]	8.5	0.9013
AT3G06880			Transducin/WD40 repeat-like su...		Lus10036201 [exp]	11.3	0.8479
AT5G54290		CcdA	cytochrome c biogenesis protei...		Lus10038581 [exp]	15.0	0.8856
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Lus10007262 [exp]	15.2	0.9152
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	19.7	0.9124
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10042524 [exp]	21.0	0.9002
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10040768 [exp]	21.2	0.9055
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Lus10033424 [exp]	21.6	0.9046

Compare expression of checked genes

Lus10037093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.