Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69310 189 / 5e-58 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT4G18170 148 / 8e-42 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT2G47260 148 / 2e-41 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT1G29860 138 / 2e-38 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT5G46350 136 / 3e-37 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT5G49520 132 / 4e-35 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT4G39410 123 / 2e-32 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT3G62340 122 / 2e-32 WRKY ATWRKY68, WRKY68 WRKY family transcription factor (.1) AT2G44745 119 / 6e-32 WRKY WRKY12 WRKY family transcription factor (.1) AT5G07100 109 / 4e-28 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036891 [exp] 436 / 1e-153 AT1G69310 220 / 5e-70 WRKY DNA-binding protein 57 (.1.2) Lus10004612 [exp] 142 / 1e-39 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10037785 [exp] 141 / 9e-39 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004537 [exp] 138 / 3e-38 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10017067 [exp] 137 / 2e-37 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10012547 [exp] 111 / 6e-30 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10012678 [exp] 115 / 2e-29 AT4G39410 169 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Lus10020832 [exp] 112 / 7e-29 AT4G39410 169 / 3e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Lus10007906 [exp] 110 / 3e-28 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094000 [exp] 234 / 4e-75 AT1G69310 213 / 3e-68 WRKY DNA-binding protein 57 (.1.2) Potri.010G160100 [exp] 223 / 5e-71 AT1G69310 208 / 4e-66 WRKY DNA-binding protein 57 (.1.2) Potri.002G193000 [exp] 145 / 7e-41 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.008G103300 [exp] 147 / 8e-41 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.014G118200 [exp] 145 / 1e-40 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.001G352400 [exp] 144 / 4e-40 AT1G29860 184 / 1e-56 WRKY DNA-binding protein 71 (.1) Potri.011G079300 [exp] 143 / 5e-40 AT1G29860 186 / 2e-57 WRKY DNA-binding protein 71 (.1) Potri.005G203200 [exp] 140 / 1e-38 AT4G18170 187 / 3e-57 WRKY DNA-binding protein 28 (.1) Potri.002G059100 [exp] 139 / 2e-38 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1) Potri.010G147700 [exp] 140 / 4e-38 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10037094 pacid=23152404 polypeptide=Lus10037094 locus=Lus10037094.g ID=Lus10037094.BGIv1.0 annot-version=v1.0 ATGGACGACGAAGGGAAGAAAAACTGCAGCAGCAACCATCCCGATCCGACATCCAACCACCACGACAACTTCAATCTCATCGGCGACTCCTCCTCCTGCT GGACCTCCGCTCTCGGATCCAGCTACTTCTTCCCTGGCATCGGTGAAAGATCCGACAGCTCATCCATACTCAGTGACTTCGGATGGAGCGGCGTTCAAAC GCATCCTACTCCTCCTGCTCCTCTTTTCCACAGCTCCGCCGAAGAGCTGGAGATCGGACAAACGAACAACCTCCTCCGCTCGACCGAGAGCAGCAGCGGC TTACAGGGATCCAGCGGCGGCGGCGGCGGCAGAGGAGAAGCACCGTCTGTTTCGAATCCTTCGGTGTCGAATCCATCGGTGTCCTCGAGTTCGAGCGAGG ATCCGGAGAAGTCGACGGGATCCGGCGGTAAGCCGCCTGAGATACCGAGTAATAAGGGCGCCGGAAAGAAGAAAGGGCAGAAAAGAATCCGGCAGCCGCG AGTTGCTTTCATGACAAAGAGTGAAATCGATCATCTTGAAGACGGCTACCGGTGGCGGAAGTACGGTCAGAAGGCCGTCAAAAACAGCCCCTTCCCAAGG AGCTACTACCGGTGCACGAACACCAAATGCACGGTGAAGAAGAGGGTCGAGCGGTCCTCGGAAGATCCCACCACCGTGATCACGACCTACGAAGGTCAGC ACTGCCACCACACCGTCGGCTTCCCCCGCGGGGCCCCCGGTGCATTCATCGGTCATCATCATCATTTCCACAACTTGGCTCCATATGGTGGGCCCGGACA CCCGATGACCTCGCCAATGTCGTCGCCACACCTCTACCACCCTGCTTCCGCCGGAATCCAGTTCCCCCGCGGCGGCGAAGGGATGGTGATGCCCCAGCAG CAAGTGCAAGTAGGGCAGGGAAGAGATTCTGACGATGAGCAACATCATCGTCAAACAGACGCCGGAGCTGCTGGTGAACGAGAGCCAAGTGAGACACGTC AGCAACATCCTACCGACGAAGGACTCCTTGGCGATCTTGTGCCTCCTGGAATGCGCAACCGATGA
AA sequence Show only first row Show all	>Lus10037094 pacid=23152404 polypeptide=Lus10037094 locus=Lus10037094.g ID=Lus10037094.BGIv1.0 annot-version=v1.0 MDDEGKKNCSSNHPDPTSNHHDNFNLIGDSSSCWTSALGSSYFFPGIGERSDSSSILSDFGWSGVQTHPTPPAPLFHSSAEELEIGQTNNLLRSTESSSG LQGSSGGGGGRGEAPSVSNPSVSNPSVSSSSSEDPEKSTGSGGKPPEIPSNKGAGKKKGQKRIRQPRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPFPR SYYRCTNTKCTVKKRVERSSEDPTTVITTYEGQHCHHTVGFPRGAPGAFIGHHHHFHNLAPYGGPGHPMTSPMSSPHLYHPASAGIQFPRGGEGMVMPQQ QVQVGQGRDSDDEQHHRQTDAGAAGEREPSETRQQHPTDEGLLGDLVPPGMRNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Lus10037094 [exp]	0	1
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10029417 [exp]	5.6	0.9146
AT4G00440			Protein of unknown function (D...		Lus10014776 [exp]	5.6	0.8494
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10039680 [exp]	5.9	0.8466
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10005910 [exp]	10.2	0.8717
AT3G02430			Protein of unknown function (D...		Lus10012734 [exp]	10.4	0.8880
AT2G43970			RNA-binding protein (.1.2)		Lus10025608 [exp]	12.3	0.8877
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10033061 [exp]	12.8	0.8473
AT1G31910			GHMP kinase family protein (.1...		Lus10012122 [exp]	14.6	0.8933
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Lus10013133 [exp]	21.2	0.8807
AT5G09310			unknown protein		Lus10037415 [exp]	21.7	0.8684

Compare expression of checked genes

Lus10037094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.