Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26610 101 / 5e-23 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G26590 73 / 1e-13 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 66 / 7e-12 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 64 / 3e-11 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 64 / 5e-11 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G19580 53 / 1e-07 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT1G27730 52 / 3e-07 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1) AT5G03510 50 / 9e-07 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G26940 50 / 1e-06 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G04340 49 / 3e-06 C2H2ZnF ZAT6, CZF2, C2H2 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036889 [exp] 309 / 3e-103 AT1G26610 151 / 9e-43 C2H2-like zinc finger protein (.1) Lus10036890 [exp] 256 / 2e-84 AT1G26610 82 / 5e-19 C2H2-like zinc finger protein (.1) Lus10026654 [exp] 246 / 2e-76 AT1G26610 233 / 1e-71 C2H2-like zinc finger protein (.1) Lus10004659 [exp] 244 / 1e-75 AT1G26610 219 / 1e-66 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 67 / 3e-12 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 66 / 3e-11 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10015888 [exp] 61 / 2e-10 AT3G60580 126 / 3e-35 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 62 / 5e-10 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 60 / 2e-09 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G159600 [exp] 250 / 2e-77 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1) Potri.008G094500 [exp] 224 / 3e-67 AT1G26610 223 / 3e-67 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 72 / 1e-13 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 69 / 2e-12 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 68 / 2e-12 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.003G077200 [exp] 67 / 7e-12 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.004G205300 [exp] 57 / 7e-09 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.017G091800 [exp] 58 / 9e-09 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1) Potri.014G066200 [exp] 57 / 1e-08 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.004G118100 [exp] 56 / 3e-08 AT3G49930 80 / 9e-17 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037095 pacid=23152501 polypeptide=Lus10037095 locus=Lus10037095.g ID=Lus10037095.BGIv1.0 annot-version=v1.0 ATGGAGGCCGCAAATCAGAAGAAGAAGTTTGTTTGCAGCTACTGCAACAAGAGGTATCCGTGTGGGAAGTCATTGGGTGGACACATTAGGATCCATTTGA AGGATTCTTCTTCTTCATATGGGAATGAAGCTCAAGCAGCAGCTGGAGATGGATACATTCTGAGGGAGAATCCGAAGAAAACCAAGAAGTTTGATGTGGA TCCAAACAAGAACAACTACCATGGTTTGCTCAAGGTTTGCAAAGAGTGTGGTAAAGGGTTTCAGTCACTCAAGGCTTTATGTGGTCATATGGCTTGTCAT TCCAGGAACTACTCCAGCTATGACTCGGATGAAGAGGAGGATTTGGTTATGGATGATGATGATGATCGTCTGTCTGATACTGAGACATCAACTCTGAGTA AGAGGAGGAGGAGATCCAAGAGGATGGTGAGGTACAAGAACATTGGTCTCTATGGGAATGGCTCTGGTGGGTCTTTGTCGTCTTCCATGGCTTCTGATTT GGAGCAAGAGCAGGAAGAAGTTGCTTTGTGCTTGATGATGCTTTCAAAAGACTCTGGTACTCTTAAAGGTTGTTTTAGGAGCTATGTTGCTGCTGCTGCT GCTGCTGATTCTTATGATGATAACAACTCTGTTGTTCTGGAGGCAAAGATGAGAATCAAGATGAAGAATAGTATTTACAGCTCAAGTTGCTATGATGGTG GTGATGATGATGATGATAAAGACGACAACTTTATGGAGATGAAGGTAGCTAGGAAGAAGAAGCAGCACCAGCAGAGGCAAGTGGTGATGTCCTCTGATGG GTATGATTCTGAGAACTCTGATTCTTCTGGCTACTTCAATTATGGTCCCAGGAAGAGTGAACTATCAGATGTGTCTACTGATGAAGTAGTAGTGAAGAAG GTTGAAATTGATTCTGGGTTTGGTGATAGTGCCTTTAATGATGATAAGGGCAAGAAGAGAATGAGCTGTTTAATGAGGAAGGAAGCCAAAGATGATAGCT TTACTGGAGGGCAACAACAAAGAACAATCATCCAGCAGCATCAGAAGAAGAAGGCTAGAGACGACACATATGAGAGCGGCGAGAACAGCTTCGAGACCGA ACAAACCACAATTCCGAGCAAGAAAAAAATGGTAGTTAAGTCATGGAACAACAATGGGAGAAAGAACCCTCCACCAGTAGCAAAGGGAAATGCAGCACTA TCCAAAAAGGCCAAAACCCATGAGTGTCCATTCTGTAACAAGGTGTTCAAGTCTGGCCAGGCATTGGGAGGCCACAAAAGGTCCCATTTTGTTGGGGCAT CTGATCATGATGGAAATGCAACTTTGGTGATCAAGTCATCAGCTGGAATGATTGATCTCAACCTCCCTGCTCCTGAAGAACTAGCAAATCCAAATGGGTT TGTCAACTGGTAG
AA sequence Show only first row Show all	>Lus10037095 pacid=23152501 polypeptide=Lus10037095 locus=Lus10037095.g ID=Lus10037095.BGIv1.0 annot-version=v1.0 MEAANQKKKFVCSYCNKRYPCGKSLGGHIRIHLKDSSSSYGNEAQAAAGDGYILRENPKKTKKFDVDPNKNNYHGLLKVCKECGKGFQSLKALCGHMACH SRNYSSYDSDEEEDLVMDDDDDRLSDTETSTLSKRRRRSKRMVRYKNIGLYGNGSGGSLSSSMASDLEQEQEEVALCLMMLSKDSGTLKGCFRSYVAAAA AADSYDDNNSVVLEAKMRIKMKNSIYSSSCYDGGDDDDDKDDNFMEMKVARKKKQHQQRQVVMSSDGYDSENSDSSGYFNYGPRKSELSDVSTDEVVVKK VEIDSGFGDSAFNDDKGKKRMSCLMRKEAKDDSFTGGQQQRTIIQQHQKKKARDDTYESGENSFETEQTTIPSKKKMVVKSWNNNGRKNPPPVAKGNAAL SKKAKTHECPFCNKVFKSGQALGGHKRSHFVGASDHDGNATLVIKSSAGMIDLNLPAPEELANPNGFVNW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10037095 [exp]	0	1
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10036890 [exp]	4.2	0.7427
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10033481 [exp]	7.1	0.6802
AT4G10265			Wound-responsive family protei...		Lus10033731 [exp]	20.3	0.7236
AT3G10040	Trihelix		sequence-specific DNA binding ...		Lus10035582 [exp]	37.5	0.6836
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10003312 [exp]	58.6	0.6695
AT1G67100	AS2	LBD40	LOB domain-containing protein ...		Lus10028469 [exp]	64.6	0.6580
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Lus10037487 [exp]	64.6	0.6361
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10011433 [exp]	74.1	0.6270
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10018311 [exp]	97.1	0.6373
AT2G18630			Protein of unknown function (D...		Lus10023459 [exp]	104.4	0.6311

Compare expression of checked genes

Lus10037095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.