Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26580 196 / 4e-56 unknown protein AT2G03470 188 / 1e-53 MYB ELM2 domain-containing protein (.1.2) AT1G13880 183 / 5e-52 ELM2 domain-containing protein (.1) AT4G11400 108 / 7e-25 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 92 / 2e-19 GYRB3 DNA GYRASE B3 (.1) AT2G46040 62 / 9e-10 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036888 [exp] 890 / 0 AT1G26580 253 / 1e-77 unknown protein Lus10004658 [exp] 387 / 1e-129 AT1G26580 243 / 1e-74 unknown protein Lus10026655 [exp] 384 / 1e-128 AT1G26580 237 / 3e-72 unknown protein Lus10000680 [exp] 192 / 3e-55 AT1G13880 200 / 3e-59 ELM2 domain-containing protein (.1) Lus10021636 [exp] 188 / 6e-54 AT2G03470 188 / 5e-55 ELM2 domain-containing protein (.1.2) Lus10024636 [exp] 112 / 3e-26 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10032272 [exp] 109 / 3e-26 AT4G11400 187 / 6e-55 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 95 / 3e-20 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10014762 [exp] 94 / 7e-20 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094400 [exp] 298 / 2e-94 AT1G26580 280 / 3e-88 unknown protein Potri.010G159700 [exp] 286 / 5e-90 AT1G26580 253 / 1e-77 unknown protein Potri.017G091900 [exp] 177 / 2e-49 AT1G26580 218 / 2e-65 unknown protein Potri.004G118400 [exp] 176 / 3e-49 AT1G26580 219 / 2e-65 unknown protein Potri.002G161100 [exp] 108 / 1e-24 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.014G086700 [exp] 107 / 3e-24 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.001G101800 [exp] 104 / 3e-24 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.003G129800 [exp] 101 / 2e-22 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037097 pacid=23152289 polypeptide=Lus10037097 locus=Lus10037097.g ID=Lus10037097.BGIv1.0 annot-version=v1.0 ATGGGATATAAACGACATTTTGATGATTCAGAGTGTCAGGAGCTTCACTTTAAGCAGGCAAGGCAACAGGACTTCACCAATAGGTCGACTCAGTTTGCTG AGAACTTGTCCTGTATTAGTCCTCCTAAGAAGCCTGATTCTTCAGTTGATTGTTACAGTAACTATGGAAAACCTCTGTGGCATGAGGTATTTGAAAACGC TGTAGTGCCCAGTAATCCTATCAATGAGGACGTGTCCTTCAGAGTGGCAGCTTCCTCTTCCTTGTCTCCTGAATATTCTGAGTATAAGGGTCTGCAGGAC TATACCCCGTTCAAGAATTTTTGTTTGCCCTTTTACGACCGCTTCCCAAAGAAGCAAGTTCATATTGGACCAGACCACCAAGCCAACATACCATTGTTGT GTGCCAATGTAGAGAAAAACAAGAAAGCGATAGACTCATCAGAGCCAAAGAATTCCAAGTACTGCGATGAGGATAAACTAATAGGCACATGCATCATTCC AATGCCTGATACTGAATCTTTTTCCTCCGACAGTGACCAGTTAAGATTTACAAAACCTGCTTGTAGCTGCCTAGACGACGGCTCGTTGAGGTGTGTAAGG CAGCATATAACAGAAGCTAGGTACAAGCTTAGAGAATCGTTGGGTCACGAGAAGTTTGCGAGTTTGGGGTTCAACAACATGGGAGAAGAGGTGGCATGGA GATGGAGTGAGGATGAAGAACGTCGTTTTCGTGCTGTTATTTACTCGAATCCCGTGTCCTTGGGTCGGAACTTCTGGAAGCCCCTTGCGCAAGTGTTTCC TACTCGATCTATGAAGGAGATTGTCAGCTACTACTTCAATGTATTCATGCTTCGGAAGCGGGCATCTCAGAACAGATCTGATGTTTTGGATGTTGATAGT GACGATGATGAATTGCATGGGATTGATGTAGGCCCCTACGAAGGTGAAGATTCGGAAGAAGAGGATGACTCTGCCATTGAATCGCCTGTTGAAGAATATG GCCTGGTCAACCATGGAAAGGACATTGTGACCGAAGATGATGATGAGGACGATGTTGATGACAACGACAACGATGACGATGATGATACTGGTGATGGGAA TTGTGACGTTGGAAATGGTTTATCTGATATTAAAAGAGAAGACTCGGGGGTTGATTATATATCAGCGCCTGCTGGTGAGAAGTCATTTAATGGCTGTACA TATGATTCTAAGTTCAACCATGCAGCAGATGGGAAGACAGAAAACCATGACGAAGATCTTACCATCCAAGATGACTCGTGTACTTCTTTCGAGTTCCAAG CTTACAAGGACGATCCTTACGACAGTGTGTACGCAAATTGCTCCACGGGTGAAGTAGACAGTTGCAGTGGCTACATGATAGATATGGTGCCCATGTTGGA CTTCCGCGATGATGAAGTTTTGTACAGACTGTACTCCAGTCCTGAAAAAGTCCTTCAGCCGGTGCTCCAATACTACTCATGTTTGCCTCTGGAGTTGCAA GCTGAGAAGGAATTGTCTTGTTGTAAACCTTTCGCAGCTGTAGGTGCTAGAATCAGTGATGCAATGGATCTGGTGCCGTTGATGGATTTTCACGACGAGA AAGCCTGGGACGCGATATTCCCAGGTTCGCTATAG
AA sequence Show only first row Show all	>Lus10037097 pacid=23152289 polypeptide=Lus10037097 locus=Lus10037097.g ID=Lus10037097.BGIv1.0 annot-version=v1.0 MGYKRHFDDSECQELHFKQARQQDFTNRSTQFAENLSCISPPKKPDSSVDCYSNYGKPLWHEVFENAVVPSNPINEDVSFRVAASSSLSPEYSEYKGLQD YTPFKNFCLPFYDRFPKKQVHIGPDHQANIPLLCANVEKNKKAIDSSEPKNSKYCDEDKLIGTCIIPMPDTESFSSDSDQLRFTKPACSCLDDGSLRCVR QHITEARYKLRESLGHEKFASLGFNNMGEEVAWRWSEDEERRFRAVIYSNPVSLGRNFWKPLAQVFPTRSMKEIVSYYFNVFMLRKRASQNRSDVLDVDS DDDELHGIDVGPYEGEDSEEEDDSAIESPVEEYGLVNHGKDIVTEDDDEDDVDDNDNDDDDDTGDGNCDVGNGLSDIKREDSGVDYISAPAGEKSFNGCT YDSKFNHAADGKTENHDEDLTIQDDSCTSFEFQAYKDDPYDSVYANCSTGEVDSCSGYMIDMVPMLDFRDDEVLYRLYSSPEKVLQPVLQYYSCLPLELQ AEKELSCCKPFAAVGARISDAMDLVPLMDFHDEKAWDAIFPGSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26580			unknown protein		Lus10037097 [exp]	0	1
AT1G26580			unknown protein		Lus10036888 [exp]	1.0	0.8362
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	6.0	0.7334
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10025071 [exp]	6.9	0.7341
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	9.0	0.7362
AT1G09050			unknown protein		Lus10004495 [exp]	10.2	0.7448
AT1G08410			P-loop containing nucleoside t...		Lus10004103 [exp]	17.7	0.7182
AT4G03000			RING/U-box superfamily protein...		Lus10021954 [exp]	17.7	0.6938
AT5G40400			Pentatricopeptide repeat (PPR)...		Lus10013077 [exp]	18.0	0.6603
AT4G37170			Pentatricopeptide repeat (PPR)...		Lus10036921 [exp]	24.7	0.6154
AT4G24200			Transcription elongation facto...		Lus10009128 [exp]	28.0	0.7315

Compare expression of checked genes

Lus10037097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.