Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26560 782 / 0 BGLU40 beta glucosidase 40 (.1) AT5G54570 615 / 0 BGLU41 beta glucosidase 41 (.1) AT3G18080 517 / 0 BGLU44 B-S glucosidase 44 (.1) AT3G18070 499 / 4e-174 BGLU43 beta glucosidase 43 (.1.2) AT5G36890 491 / 3e-171 BGLU42 beta glucosidase 42 (.1.2) AT2G44480 486 / 1e-168 BGLU17 beta glucosidase 17 (.1.2) AT5G24550 463 / 2e-159 BGLU32 beta glucosidase 32 (.1) AT3G60140 459 / 4e-157 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT3G60130 455 / 2e-156 BGLU16 beta glucosidase 16 (.1.2.3) AT1G61820 455 / 3e-156 BGLU46 beta glucosidase 46 (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036885 [exp] 983 / 0 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10004654 [exp] 831 / 0 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10026657 [exp] 728 / 0 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10009218 [exp] 607 / 0 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10037988 [exp] 587 / 0 AT5G54570 741 / 0.0 beta glucosidase 41 (.1) Lus10031235 [exp] 545 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10037987 [exp] 539 / 0 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10031251 [exp] 538 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10031234 [exp] 536 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094200 [exp] 775 / 0 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.010G159900 [exp] 767 / 0 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.001G409900 [exp] 610 / 0 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.004G040700 [exp] 523 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 517 / 0 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 516 / 1e-180 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.012G049300 [exp] 509 / 1e-177 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.015G041300 [exp] 505 / 4e-176 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.010G178800 [exp] 503 / 8e-176 AT5G36890 714 / 0.0 beta glucosidase 42 (.1.2) Potri.001G015100 [exp] 503 / 2e-175 AT5G44640 553 / 0.0 beta glucosidase 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10037098 pacid=23152373 polypeptide=Lus10037098 locus=Lus10037098.g ID=Lus10037098.BGIv1.0 annot-version=v1.0 ATGGCTTCGACGACGTCGTCACTATTACTACTAACGTCGTTCACGTTACTTTTAACGGCGGCCACGTCGCAGAACATCTCCAGGGCCAGCTTCCCCGCCG TGTTCACCTTCGGAACTGCCTCCTCTGCTTTCCAGTATGAAGGAGCAGTGAAAGCTGATGGAAGAGGGCCAAGTATATGGGACACGTACTCTCATACCTT CGGAAAAATACTTGATTTCAGCAATGCTGACGTTGCTGTAGATCAATACCATCGCTTCAATGAAGATATACAGTTAATGAAGGGTATGGGTTTGGATGCC TACAGATTCTCCATTTCATGGACTCGGATCTATCCTGACGGCACGGGGCAAATTAACGAGGCAGGAGTCGACCATTACAACAAAGTGATCAATGCATTGC TCGCTAATGGAATCCAACCGTACATCACATTGTACCATTGGGACCTTCCCCAAGCCTTGCACGACAAGTATACCGGATGGCTCGATCGCCAGATCATCAA GGATTTCGCGATGTATGCGGAGACATGCTTCCAGAAATTTGGGGATAGAGTAAAGCACTGGATCACGTTCAACGAGCCTCATACGTTCGCTGTCCAGGGC TATGATGCTGGCCTCCAAGCTCCAGGTCGTTGCTCCGTCGCTCTCCGCCTCTGGTGCAAAGGAGGGAACTCAGCCACCGAGCCGTACATTGTCGCCCACA ACACAATCCTTGCACATGCCACCACTGCCGACATCTACCGACGAAAGTACAAGCCCACCCAGAAGGGAATCATCGGCGCTTCCTTCGACGTTATATGGTA CGAGCCCGGGTCCAACTCCCAGAACGACATCGAGGCGGCCCAACGGGCTCAAGACTTCCAGTTGGGTTGGTTCATGGACCCACTGGTGTTGGGGGACTAC CCGAGCTCCATGAGGAGCCGGGTGGGGACTCGTCTCCCCAAGTTCTCGGACTCCGAGGTTAAAATGGTCAAAGGATCGTTGGATTTCGTCGGGATTAACC ATTACACGACGTTTTACGCCAGCAATGGCTCGTCTGGTATTGTGAATTTCTTGCTGAATGACACGCTCGCGGATTCTGATACTGTTGCCTTTCCGTTCAA AAATGGCAAGGCTATTGGTGAAAGGGCGAATGCGATATGGTTGTACATGGTACCACAAGGGATGCGAAGTTTGATGAACTATGTCAAGCAGAGGTACGGG AACCCTCCCGTCTACATCACTGAAAACGGTATGGATGACCCGAACAGCCCATTCATCTCGATCAAAGATGCACAAAAGGACGAGAAAAGGATCCGATACC TCAATGGTTACCTTACAAGCTTGCTAGCTTCCATCAAGGAAGATGGGTGCAATGTGAAAGGGTACTTTGTGTGGTCATTGCTAGACAATTGGGAATGGTC AGCTGGATACACTTCAAGATTTGGTCTCTACTATGTTGATTTCAAGGATAATCTCAAGAGATACCCTAAGAACTCTGTTACTTGGCTCACAAACTTCTTG ACCCCTTCTGCTTAA
AA sequence Show only first row Show all	>Lus10037098 pacid=23152373 polypeptide=Lus10037098 locus=Lus10037098.g ID=Lus10037098.BGIv1.0 annot-version=v1.0 MASTTSSLLLLTSFTLLLTAATSQNISRASFPAVFTFGTASSAFQYEGAVKADGRGPSIWDTYSHTFGKILDFSNADVAVDQYHRFNEDIQLMKGMGLDA YRFSISWTRIYPDGTGQINEAGVDHYNKVINALLANGIQPYITLYHWDLPQALHDKYTGWLDRQIIKDFAMYAETCFQKFGDRVKHWITFNEPHTFAVQG YDAGLQAPGRCSVALRLWCKGGNSATEPYIVAHNTILAHATTADIYRRKYKPTQKGIIGASFDVIWYEPGSNSQNDIEAAQRAQDFQLGWFMDPLVLGDY PSSMRSRVGTRLPKFSDSEVKMVKGSLDFVGINHYTTFYASNGSSGIVNFLLNDTLADSDTVAFPFKNGKAIGERANAIWLYMVPQGMRSLMNYVKQRYG NPPVYITENGMDDPNSPFISIKDAQKDEKRIRYLNGYLTSLLASIKEDGCNVKGYFVWSLLDNWEWSAGYTSRFGLYYVDFKDNLKRYPKNSVTWLTNFL TPSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10037098 [exp]	0	1
AT3G10330			Cyclin-like family protein (.1...		Lus10031056 [exp]	4.9	0.6769
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10040094 [exp]	10.5	0.6918
AT2G41480			Peroxidase superfamily protein...		Lus10015555 [exp]	24.6	0.6830
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10017883 [exp]	34.5	0.6400
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10003336 [exp]	37.6	0.6713
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	48.0	0.6747
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	57.0	0.6446
					Lus10006638 [exp]	58.8	0.6579
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Lus10006323 [exp]	61.8	0.6217
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021540 [exp]	63.6	0.6641

Compare expression of checked genes

Lus10037098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.