Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26560 149 / 7e-44 BGLU40 beta glucosidase 40 (.1) AT5G54570 121 / 2e-33 BGLU41 beta glucosidase 41 (.1) AT2G44470 105 / 3e-27 BGLU29 beta glucosidase 29 (.1.2.3) AT5G24550 104 / 3e-27 BGLU32 beta glucosidase 32 (.1) AT5G36890 102 / 2e-26 BGLU42 beta glucosidase 42 (.1.2) AT3G60140 102 / 2e-26 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G24540 102 / 3e-26 BGLU31 beta glucosidase 31 (.1) AT2G44490 99 / 5e-25 BGLU26, PEN2 PENETRATION 2, BETA GLUCOSIDASE 26, Glycosyl hydrolase superfamily protein (.1) AT1G61820 97 / 7e-25 BGLU46 beta glucosidase 46 (.1.3) AT3G18080 97 / 2e-24 BGLU44 B-S glucosidase 44 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037098 [exp] 197 / 7e-62 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10036885 [exp] 191 / 1e-59 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10004654 [exp] 165 / 1e-49 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10037987 [exp] 135 / 8e-38 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10009218 [exp] 133 / 5e-37 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10037988 [exp] 132 / 5e-37 AT5G54570 741 / 0.0 beta glucosidase 41 (.1) Lus10020234 [exp] 94 / 4e-25 AT5G36890 217 / 2e-69 beta glucosidase 42 (.1.2) Lus10019531 [exp] 99 / 5e-25 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 97 / 2e-24 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094200 [exp] 155 / 4e-46 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.010G159900 [exp] 150 / 4e-44 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.001G409900 [exp] 120 / 8e-33 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.004G109699 [exp] 102 / 7e-27 AT5G44640 288 / 5e-94 beta glucosidase 13 (.1) Potri.004G109166 [exp] 102 / 3e-26 AT5G42260 525 / 0.0 beta glucosidase 12 (.1) Potri.004G110620 [exp] 102 / 3e-26 AT5G42260 525 / 0.0 beta glucosidase 12 (.1) Potri.004G110691 [exp] 102 / 3e-26 AT2G44480 524 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222900 [exp] 102 / 3e-26 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223300 [exp] 102 / 3e-26 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222904 [exp] 102 / 3e-26 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10037099 pacid=23152470 polypeptide=Lus10037099 locus=Lus10037099.g ID=Lus10037099.BGIv1.0 annot-version=v1.0 ATGAGGTTTTGTTGTGCGAAACAAGTATCATTGATTTTGGGTTGCTGTTTGGGGCATCTACAGGAGGCTTTATTGTGCGAGAGATCATCCAACTGTATGG ATAACCCGCATAGCCCATTCATCTCGATCAAAGATGCACAAAAGGACGAGAAAAGGATCAGATACCTCAATGGTTACCTTACAAACTTGCTAGCTTCCAT CAAGGAAGATGGGTGCAATGTGAAAGGGTACTTTGTGTGGTCATTGCTAGACAATTGGGAATGGTCAGCTGGATACACTTCAAGATTTGGTCTCTACTAT GTTGATTTCAAGGATAATCTCAAGAGATACCCTAAGAACTCTGTTACTTGGCTCACAAACTTCTTGACCCCTTCTGCTTAA
AA sequence Show only first row Show all	>Lus10037099 pacid=23152470 polypeptide=Lus10037099 locus=Lus10037099.g ID=Lus10037099.BGIv1.0 annot-version=v1.0 MRFCCAKQVSLILGCCLGHLQEALLCERSSNCMDNPHSPFISIKDAQKDEKRIRYLNGYLTNLLASIKEDGCNVKGYFVWSLLDNWEWSAGYTSRFGLYY VDFKDNLKRYPKNSVTWLTNFLTPSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10037099 [exp]	0	1
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10003756 [exp]	1.0	0.9724
AT1G27170			transmembrane receptors;ATP bi...		Lus10008414 [exp]	1.4	0.9043
AT2G30300			Major facilitator superfamily ...		Lus10015470 [exp]	2.4	0.8863
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10013753 [exp]	18.3	0.7620
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10025692 [exp]	20.4	0.7607
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	22.3	0.7588
					Lus10024141 [exp]	24.1	0.7588
					Lus10013255 [exp]	25.8	0.7588
					Lus10013259 [exp]	27.3	0.7588
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	28.8	0.7588

Compare expression of checked genes

Lus10037099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.