Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13870 436 / 3e-155 DRL1, AtKTI12 DEFORMED ROOTS AND LEAVES 1, calmodulin binding;purine nucleotide binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036884 [exp] 135 / 2e-40 AT1G13870 87 / 1e-22 DEFORMED ROOTS AND LEAVES 1, calmodulin binding;purine nucleotide binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G094600 [exp] 509 / 0 AT1G13870 451 / 2e-161 DEFORMED ROOTS AND LEAVES 1, calmodulin binding;purine nucleotide binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08433 [flax] [poplar] KTI12 Chromatin associated protein KTI12
Representative CDS sequence Show only first row Show all	>Lus10037100 pacid=23152548 polypeptide=Lus10037100 locus=Lus10037100.g ID=Lus10037100.BGIv1.0 annot-version=v1.0 ATGGCTTTGGTAGTTATCTGTGGGCAGCCATGTAGTGGGAAGTCCACAGCTGCAACTAGCTTAGCCGAAGCCCTAAGAGGCTCCGAGACGAATTTCAACG TTAGGGTAATCGACGAAGCATCCTTCCACCTCGATCGAAACCAGAACTACGCAAACATGCCAGCCGAGAAGAACCTAAGAGGAGTTCTCAGGTCGGAAGT TGACAGGTCCGTATCAAAGGACAACATCATCATTGTGGACTCTCTAAACAACATCAAAGGCTATAGGTACGAGCTCTGGTGCTTGGCTCGTGCCACCGGG ATAAGACATTGCGTGGTGTTCTGCGACGTGGAAGGAAACCAGTGCCAGCGATGGAACGAAGCCAGGAGAGAGAAGGGAGAATCTTCGTATAATGATTCCA TCTTCGATGACTTGGCGAGAAGGTTCGAGAGGCCAGATAGCCGAAACCGGTGGGACTCTCCACTATTTGAATTGTCTCCGTCTAGGGATGGAATTGAGAC GTATTCGGCTGTGATTGGGGATGCTGTTTCGTACTTGACTAAAGTGGTGGACTCGAGGACCCGAGATGTTAGGGTCTTGCAGCCGACGATTGCTACTCAA AGCACGAAATTCTCTGAAGCAAATTCTTTGTATGAGCTGGACAAGGCGACACAAGAGGTGATCAGTGTGATTGTGGAAGCACAGTCCCAAGCTCTTGGAG GGCCTATGAATGGTATCTATATTGGACCGGACTTGCCAACTCTTAACGTTTCAAAATCGGTTGGGTTGCCAGAGCTTCGGAGGCTCAGGCGGACGTTTAT GCAGTTAACCGGTCAGACCAGCTTGAGCGGAAGGCCTCCTCCATCGGATGCAGAGAGTGCGAAGAGGATGTTTGTGGATTACTTGAACAGGGAGCTTGAT ACTGCTTGA
AA sequence Show only first row Show all	>Lus10037100 pacid=23152548 polypeptide=Lus10037100 locus=Lus10037100.g ID=Lus10037100.BGIv1.0 annot-version=v1.0 MALVVICGQPCSGKSTAATSLAEALRGSETNFNVRVIDEASFHLDRNQNYANMPAEKNLRGVLRSEVDRSVSKDNIIIVDSLNNIKGYRYELWCLARATG IRHCVVFCDVEGNQCQRWNEARREKGESSYNDSIFDDLARRFERPDSRNRWDSPLFELSPSRDGIETYSAVIGDAVSYLTKVVDSRTRDVRVLQPTIATQ STKFSEANSLYELDKATQEVISVIVEAQSQALGGPMNGIYIGPDLPTLNVSKSVGLPELRRLRRTFMQLTGQTSLSGRPPPSDAESAKRMFVDYLNRELD TA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13870		DRL1, AtKTI12	DEFORMED ROOTS AND LEAVES 1, c...		Lus10037100 [exp]	0	1
AT1G80930			MIF4G domain-containing protei...		Lus10003392 [exp]	9.1	0.7910
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Lus10006878 [exp]	17.6	0.7503
AT3G06778			Chaperone DnaJ-domain superfam...		Lus10016835 [exp]	76.1	0.7089
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10025174 [exp]	77.9	0.7279
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10010156 [exp]	118.3	0.6963
AT1G07830			ribosomal protein L29 family p...		Lus10024720 [exp]	133.4	0.7176
					Lus10021921 [exp]	259.3	0.6798

Compare expression of checked genes

Lus10037100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.