Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13860 808 / 0 QUL1 QUASIMODO2 LIKE 1 (.1.2.3.4) AT2G03480 805 / 0 QUL2 QUASIMODO2 LIKE 2 (.1.2) AT1G78240 631 / 0 OSU1, TSD2, QUA2 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G06050 305 / 1e-94 Putative methyltransferase family protein (.1) AT3G23300 302 / 3e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 299 / 3e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G14360 296 / 6e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G14430 293 / 5e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G04060 292 / 1e-90 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G10200 292 / 1e-90 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036883 [exp] 1125 / 0 AT1G13860 887 / 0.0 QUASIMODO2 LIKE 1 (.1.2.3.4) Lus10036485 [exp] 600 / 0 AT1G78240 928 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010353 [exp] 563 / 0 AT1G78240 859 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10001013 [exp] 308 / 1e-95 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 307 / 2e-95 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10038973 [exp] 304 / 6e-95 AT5G04060 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 305 / 8e-95 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10027266 [exp] 301 / 4e-94 AT5G04060 890 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022291 [exp] 294 / 3e-91 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G159400 [exp] 931 / 0 AT2G03480 885 / 0.0 QUASIMODO2 LIKE 2 (.1.2) Potri.008G094800 [exp] 927 / 0 AT2G03480 873 / 0.0 QUASIMODO2 LIKE 2 (.1.2) Potri.002G098000 [exp] 645 / 0 AT1G78240 1040 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G163900 [exp] 643 / 0 AT1G78240 1028 / 0.0 TUMOROUS SHOOT DEVELOPMENT 2, QUASIMODO2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G059500 [exp] 311 / 4e-97 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G036800 [exp] 300 / 3e-93 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 295 / 2e-91 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G199300 [exp] 296 / 3e-91 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G043600 [exp] 294 / 3e-91 AT3G10200 928 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 284 / 3e-87 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10037101 pacid=23152539 polypeptide=Lus10037101 locus=Lus10037101.g ID=Lus10037101.BGIv1.0 annot-version=v1.0 ATGAGAAGCCCCTGGCTTAACAAACTATATGGTACTTTAGGCCCTAGACCGCCAGCTAGTTTGCTGCTGTTGTGTCTGGTGTGTGTGCTGGTAGTGATTG CCGTTTTGGGATCGACTTCTTCTCCCACGTTTGATGCTGTCACGATCACCCCGGTCCCGAACATCTATTCGAACTATAGGAGGTTGAAGGAGCAGGCTGC AATTGACTATTTGGAGCTTCGGTCGTTCTCGATTTCGGCTACTAGGCAGCAAGTGCTTGACCTCTGTGCGAAAGAGAGGGAACATTTCGTGCCTTGTTAT AACGTCACTGCAAACACATTGGCTGGGTATAAGGATGGGGAAGAGTTCGATCGACATTGTGAAACTTTCAGGGCTAGGGATCGGTGTTTGGTTCGGCCTC CAAAGGATTACAAGATTCCCTTGAGATGGCCTGCTGGCCGTGACGTGATATGGAGTGGCAATGTGAGGCTAACTCGAGACCAGTTCCTTTCTTCTGGAAG CATGACAAAGAGGTTGATGCTGCTGGAAGAGAATCAAATTGCTTTCCACTCCGAGGATGGATTGATCTTTGATGGGGTGAAAGACTACTCCCGACAAGTT GCTGAAATGATTGGGTTAGGAAGTGACACTGAGTTCCCTCAAGCCGGTGTACGAACGGTATTGGATATTGGTTGCGGGTTTGGTAGCTTTGGAGCTCATC TAGTGTCACGCAAGGTTATGCCTATATGTACAGCTGCTTATGAAGCCACTGGCAGTCAAGTTCAACTGGCCCTTGAGAGAGGTCTTCCAGCTATGATTGG GAATTTTATTTCTCGTCAATTTCCATATCCGTCATTGTCGTTTGACATGGTTCACTGTACTCAGTGCAGTATTATCTGGGACGACAAAGATGGTATGTTC CTTATCGAAGTGGACCGGATTCTCAAGCCAGGAGGTTACTTTGTGCTAACCTCTCCAGCAAGTAAACCATCTGCAAGTTCATCTAGAACAAAGAAGACAA GCATGGTGGCACCAATAGAAGAATTCACCGAGAAGATATGTTGGAGTCTGATGGCTCAGCAGGATGAGACTTTCATCTGGCAGAAAACTGCCGATGCCAA TTGCTATAAATCTCGTAAGTCAGCTGTTCCTCTCGTTTGCAACGAGGAGAATGATCTCCCCCCTTATTACCAGCCTCTTGTTTCGTGCATCAGTGGAACC ACCAGCCAACGCTGGATTCCCATTCAGAATCGGTCCTCCGAGAGGTTAAGCTCATCCGAGCTTCACATTCACGGAGTTAATCCTGACGAGTTCTTCGAAG ATTCTCAGGTGTGGCGGTCAGCTCTTAGAAATTACTGGTCTTTGCTCACACCATTAATTTTCTCTGACCATCCAAAGAGGCCTGGTGATGAAGACCCTTT ACCTCCATTCAACATGCTACGAAACGTTATGGACATGAACGCTCATTACGGTGGCTTGAATGCCGCTTTTCTGGAGGAAAAGAAGTCGGTTTGGGTGATG AATGTTGTGCCTGTTAGGGCCCGTAACACCCTTCCCCTCATAATCGATCGAGGCTTCGCTGGTGTTTTACATGACTGGTGTGAGCCCTTCCCGACATACC CTCGAACATACGATATGCTCCATGGATACGGTCTGCTCTCTCATCTTAGTTCAGAAAGGTGTGGTATGATGGACGTACTACTCGAAATGGATCGAATTTT ACGACCTGAGGGATGGGTGGTTCTTTCGGACAGCATGGCAGCAATTGAGATGGCACGAGCACTGGCTGCGCAGATACATTGGGAAGCGAGAGTGGTCGAT CCTCAGAACGGCAGTGACCAGCGATTACTGGTTTGCCAGAAACCATTTGTCAAGAAATGA
AA sequence Show only first row Show all	>Lus10037101 pacid=23152539 polypeptide=Lus10037101 locus=Lus10037101.g ID=Lus10037101.BGIv1.0 annot-version=v1.0 MRSPWLNKLYGTLGPRPPASLLLLCLVCVLVVIAVLGSTSSPTFDAVTITPVPNIYSNYRRLKEQAAIDYLELRSFSISATRQQVLDLCAKEREHFVPCY NVTANTLAGYKDGEEFDRHCETFRARDRCLVRPPKDYKIPLRWPAGRDVIWSGNVRLTRDQFLSSGSMTKRLMLLEENQIAFHSEDGLIFDGVKDYSRQV AEMIGLGSDTEFPQAGVRTVLDIGCGFGSFGAHLVSRKVMPICTAAYEATGSQVQLALERGLPAMIGNFISRQFPYPSLSFDMVHCTQCSIIWDDKDGMF LIEVDRILKPGGYFVLTSPASKPSASSSRTKKTSMVAPIEEFTEKICWSLMAQQDETFIWQKTADANCYKSRKSAVPLVCNEENDLPPYYQPLVSCISGT TSQRWIPIQNRSSERLSSSELHIHGVNPDEFFEDSQVWRSALRNYWSLLTPLIFSDHPKRPGDEDPLPPFNMLRNVMDMNAHYGGLNAAFLEEKKSVWVM NVVPVRARNTLPLIIDRGFAGVLHDWCEPFPTYPRTYDMLHGYGLLSHLSSERCGMMDVLLEMDRILRPEGWVVLSDSMAAIEMARALAAQIHWEARVVD PQNGSDQRLLVCQKPFVKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10037101 [exp]	0	1
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10037617 [exp]	3.9	0.8996
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	4.5	0.9196
AT5G65630		GTE7	global transcription factor gr...		Lus10020470 [exp]	4.7	0.8873
AT1G35220			unknown protein		Lus10010355 [exp]	5.0	0.9243
AT3G19870			unknown protein		Lus10012903 [exp]	5.3	0.9139
AT2G25800			Protein of unknown function (D...		Lus10008430 [exp]	5.3	0.9235
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10038111 [exp]	5.5	0.9146
AT1G64650			Major facilitator superfamily ...		Lus10017322 [exp]	6.2	0.9055
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10023103 [exp]	6.7	0.9134
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Lus10038484 [exp]	7.2	0.8664

Compare expression of checked genes

Lus10037101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.