Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17890 563 / 0 GER2 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G73250 557 / 0 GER1, ATFX "GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1", ACTIVATING TRANSCRIPTION FACTOR 5, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (.1) AT5G28840 89 / 8e-20 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT3G14790 72 / 7e-14 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G78570 69 / 1e-12 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT1G53500 64 / 3e-11 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT3G53520 64 / 3e-11 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT5G59290 63 / 5e-11 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G46440 62 / 1e-10 UXS5 UDP-XYL synthase 5 (.1.2) AT1G64440 62 / 1e-10 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036882 [exp] 640 / 0 AT1G17890 558 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10020247 [exp] 86 / 1e-18 AT5G28840 719 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10001777 [exp] 86 / 2e-18 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10015915 [exp] 86 / 2e-18 AT5G28840 726 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10009174 [exp] 85 / 4e-18 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10010942 [exp] 68 / 2e-12 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10023074 [exp] 67 / 4e-12 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10005450 [exp] 64 / 2e-11 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10020776 [exp] 65 / 3e-11 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G101700 [exp] 598 / 0 AT1G17890 549 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G179100 [exp] 597 / 0 AT1G17890 565 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.013G040600 [exp] 86 / 2e-18 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.005G053000 [exp] 85 / 3e-18 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.016G080500 [exp] 69 / 1e-12 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G272700 [exp] 68 / 2e-12 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.011G103700 [exp] 67 / 5e-12 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 67 / 6e-12 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G214000 [exp] 66 / 9e-12 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.008G053100 [exp] 64 / 3e-11 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10037102 pacid=23152623 polypeptide=Lus10037102 locus=Lus10037102.g ID=Lus10037102.BGIv1.0 annot-version=v1.0 ATGGGATCCTCAGGTTCAGCTGGTTCTGCATTCTTAGCTGATAAAGCAGCCAAGATCTTCGTGGCGGGACATCGTGGTCTCGTGGGATCTGCCATTGTCC GTAAACTTCAGTCCCTAGGGTTTTCCAACCTGCTGCTCCGCACCCATGCTGAGCTCGATCTCACTCGCCAGTCCGAAGTCGAATCGTTCTTCGCTGCTGA GAAGCCTGAGTTTGTGATCCTGGCAGCTGCGAAAGTTGGTGGCATCCACGCGAACAACACTTACCCTGCTGATTTCATCGGTATCAATCTCCAGATCCAG ACCAATGTCATCGACTCAGCTTACAAACACGGTGCCAAGAAGCTGCTCTTCCTCGGGTCATCTTGCATCTACCCAAAATTAGCTCCTCAGCCGATCCCCG AGGAGGCACTGCTCACCGGTCCTTTAGAGCCAACCAACGAGTGGTACGCAGTAGCCAAGATATCCGGGATCAAGATGTGCCAAGCGTACAGGATACAGTA CACTTGGGATGCCATCTCCGGGATGCCAACGAACTTGTACGGTCCGAACGACAATTTCCACCCGGAGAACTCGCACGTACTTCCTGCCCTAATGAGGAGA TTCCACGAGGCGAAGGTGAATAATGCCAAGGAAGTGGTGGTTTGGGGCACGGGAAGCCCGTTGAGGGAGTTTCTTCACGTCGATGATCTGGCAGATGCTA CAGTGTTTATGATGGAAAAGTACAGCGGGCTGGAGCATTTGAATGTTGGGAGTGGCAAGGAGGTGACGATTAAGGAGTTGGCTGAGTTGGTGAAAGAAGT TGTTGGGTTCGAAGGAGATCTCGTTTGGGACTCGTCGAAGCCTGATGGAACTCCGAGGAAGCTCATGGATAGCTCGAAGCTGCTTGGTATGGGTTGGACC CCGAAGGTTTCGCTGAGGGAAGGACTTGTTGACACCTACAAGTGGTATGTGGAGAATGTAACCAAGCAATAA
AA sequence Show only first row Show all	>Lus10037102 pacid=23152623 polypeptide=Lus10037102 locus=Lus10037102.g ID=Lus10037102.BGIv1.0 annot-version=v1.0 MGSSGSAGSAFLADKAAKIFVAGHRGLVGSAIVRKLQSLGFSNLLLRTHAELDLTRQSEVESFFAAEKPEFVILAAAKVGGIHANNTYPADFIGINLQIQ TNVIDSAYKHGAKKLLFLGSSCIYPKLAPQPIPEEALLTGPLEPTNEWYAVAKISGIKMCQAYRIQYTWDAISGMPTNLYGPNDNFHPENSHVLPALMRR FHEAKVNNAKEVVVWGTGSPLREFLHVDDLADATVFMMEKYSGLEHLNVGSGKEVTIKELAELVKEVVGFEGDLVWDSSKPDGTPRKLMDSSKLLGMGWT PKVSLREGLVDTYKWYVENVTKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10037102 [exp]	0	1
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Lus10017868 [exp]	3.2	0.8232
AT5G01710			methyltransferases (.1)		Lus10012217 [exp]	3.3	0.8700
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10000046 [exp]	4.2	0.8075
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	5.0	0.8109
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037519 [exp]	14.4	0.8165
AT5G63380			AMP-dependent synthetase and l...		Lus10032755 [exp]	16.5	0.7886
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10000995 [exp]	18.1	0.8012
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	19.0	0.7974
					Lus10039878 [exp]	20.4	0.7960
AT1G42960			unknown protein		Lus10016034 [exp]	23.4	0.7427

Compare expression of checked genes

Lus10037102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.