Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16290 546 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036958 [exp] 809 / 0 AT1G16290 561 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G172300 [exp] 641 / 0 AT1G16290 567 / 0.0 unknown protein Potri.008G084100 [exp] 632 / 0 AT1G16290 569 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF01464 [flax] [poplar] SLT Transglycosylase SLT domain
Representative CDS sequence Show only first row Show all	>Lus10037104 pacid=23152393 polypeptide=Lus10037104 locus=Lus10037104.g ID=Lus10037104.BGIv1.0 annot-version=v1.0 ATGTCGGTTAGCTTCAAGTACTGGGATGATTGTGTTGATCCCAAGGACTTGGAGGCGATGTGGAAGGAACCTGCTGTCAGCACTGAATGGCTGGACGCCG GCGAGACTCGCGGTCAAAAAATTCACATTTCACGTGATCCCGACGGCCAGACCTATTTAACTCAGACCGAGATGAAGGCAGTAGCTGATATCATCGTCCG TAGGCACTTCGATTCACAGATATCTCCAGATATGATATGTGCTATTGCTGAACTTGCAAGCGACAGGCAGCTTCTCTCTAGGCATTTTCATAAGAAATCT AAGGAGATCACTGTAGGAATAATGCAAATTTTCCCAAAAACTGCTCAGTGGTTGGAGAGAGATTTTGGCTCCCGGGTTTACATACTTGGAGATAATCCAG ACATTCTCTATAAGCCTTTTGTGAGTGTATATTTCGGTGCTGCATATTTGAAATGGCTATCCAACTTCGAGCACAAAGAACGAAGTGAAGAGTTCATTGT TAGGGCTTATCATGGTGGCACCAAAAAGGCTACACATAAATCAACTTTGCAATACTGGAAACGGTACCTCTCGGTTAAAGAAAGTCTTCCTTCCAGACGA TTTTCAAACGAAGGGACCTCTGGAAATACTGATTGTACTTCAACTAGGCCATCAGCATCTGCTTCTCATCCATCTTCTTCACAAAGCTCAGGCGGTGATC ATATGCACTGGGACTCTAGATCTTCTCCTGAGGATATGGCAGAGATGTGGAATCAGCATGACGTTGCAAGAGAATGGACGAAATCAGGGGAAAGGCGTGG GAAAGTACGTTTCTCGCATGACAAAGAGCACAGACCATATTTGTCCCGAATAGAAACCAAGGCAGTTGCAAGCATAATTCTCTCGAAGCATTTCAGCACC AGAGGAGTTAGGCCATCAGTCCTCTGCGCCCTGGCTGAGATGGTTAGTATGCGTTTCCTCAATGGGATCGGACATCGAACTGGAATAATGGGCATCGCCT CCTCTACCGCCTTTTGGCTTTACACGGAGTTGGGCTACCGGGCATACAGAGTCGTTTCGGCTGATGATATGACCAAACCATTTCTGTCCATGTATTTCGG GGCCGCTTACATGGCATGGCTATCGGAATACGAGAGAAGGGAAAGAACTCCACAGTTTGTAGTGCAGGCATACATCGCTGGGCCAAAGAATGTGAGACAG GAGACTGGTCCGCTGTGGCTTAAGTTCGAGCAAGCATTAGGCAACTATGAAGACATGAAGAGGTACGCACCCTTTGAACTATAG
AA sequence Show only first row Show all	>Lus10037104 pacid=23152393 polypeptide=Lus10037104 locus=Lus10037104.g ID=Lus10037104.BGIv1.0 annot-version=v1.0 MSVSFKYWDDCVDPKDLEAMWKEPAVSTEWLDAGETRGQKIHISRDPDGQTYLTQTEMKAVADIIVRRHFDSQISPDMICAIAELASDRQLLSRHFHKKS KEITVGIMQIFPKTAQWLERDFGSRVYILGDNPDILYKPFVSVYFGAAYLKWLSNFEHKERSEEFIVRAYHGGTKKATHKSTLQYWKRYLSVKESLPSRR FSNEGTSGNTDCTSTRPSASASHPSSSQSSGGDHMHWDSRSSPEDMAEMWNQHDVAREWTKSGERRGKVRFSHDKEHRPYLSRIETKAVASIILSKHFST RGVRPSVLCALAEMVSMRFLNGIGHRTGIMGIASSTAFWLYTELGYRAYRVVSADDMTKPFLSMYFGAAYMAWLSEYERRERTPQFVVQAYIAGPKNVRQ ETGPLWLKFEQALGNYEDMKRYAPFEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16290			unknown protein		Lus10037104 [exp]	0	1
AT1G75980			Single hybrid motif superfamil...		Lus10017287 [exp]	3.3	0.8725
AT1G75290			NAD(P)-binding Rossmann-fold s...		Lus10021709 [exp]	4.2	0.8568
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Lus10031726 [exp]	6.9	0.8469
AT3G59250			F-box/RNI-like superfamily pro...		Lus10031018 [exp]	6.9	0.7902
					Lus10040041 [exp]	14.5	0.8561
AT3G27030			unknown protein		Lus10041551 [exp]	15.7	0.7590
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10034220 [exp]	15.7	0.5706
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10008078 [exp]	16.7	0.8220
					Lus10014474 [exp]	16.9	0.7914
AT2G25700		ASK3	SKP1-like 3 (.1)		Lus10043288 [exp]	17.7	0.8279

Compare expression of checked genes

Lus10037104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.