Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15680 44 / 2e-05 F-box family protein (.1) AT3G26010 39 / 0.0008 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G22430 39 / 0.001 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036954 [exp] 255 / 3e-85 ND 48 / 5e-06 Lus10003922 [exp] 218 / 8e-70 AT3G26010 60 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037467 [exp] 219 / 3e-69 AT3G26010 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028682 [exp] 98 / 3e-24 AT5G49610 62 / 2e-10 F-box family protein (.1) Lus10000860 [exp] 89 / 1e-20 AT5G49610 52 / 3e-07 F-box family protein (.1) Lus10035796 [exp] 49 / 9e-07 ND 45 / 1e-04 Lus10000664 [exp] 47 / 2e-06 AT3G23570 166 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1) Lus10000667 [exp] 46 / 3e-06 ND 51 / 4e-07 Lus10041733 [exp] 45 / 1e-05 AT5G07610 79 / 1e-15 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 52 / 4e-08 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.007G027300 [exp] 50 / 2e-07 AT5G49610 80 / 2e-16 F-box family protein (.1) Potri.008G038000 [exp] 44 / 3e-05 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.011G000700 [exp] 42 / 0.0001 AT3G15910 58 / 5e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037105 pacid=23152528 polypeptide=Lus10037105 locus=Lus10037105.g ID=Lus10037105.BGIv1.0 annot-version=v1.0 ATGCATACTCCTCATCTACCGACTGAAATCTTGACTCGCGTTCCCTGGGTCGATTTGTTTGGGTGCAAGAATTTCTGCGAGCTCTGGCTCTCTTGTCTGA ATCTTCCCGATATCAGCTTGAAATACATAGTATTGGGATCATCAAATGGCTTGCTCTTGTGCACCCGTCACATAGGCTGGGGTGAGACATACTGCATTTG CAACCCGATCACTAAGAAATGGCTCGAGCTTCCCCCGTTCCCTCCTTGTGAGAACAACATGGACGTTAAAGTTGGTTTCGTATGTGATCCATTCTACCGT TTCAACGAGGATGATGGTTCGGTCAGTGTGAATGGTCAATTCGGATTCAAGGTGGTTTGTCTCGATGCCTCTCGTCACAGCGAGGGTGAGGGTATTCGCG ATGTTAACGTGGAGCTGTTCTCGTCGCAGACGGGATGCTGGACAACTACTTATGGAGTACCATTACCAGACCATATCGATGGTATGATTGAAATTCTTGT TGAAGGGCACATGGTTGACTATAACGGGAAGCTTTAG
AA sequence Show only first row Show all	>Lus10037105 pacid=23152528 polypeptide=Lus10037105 locus=Lus10037105.g ID=Lus10037105.BGIv1.0 annot-version=v1.0 MHTPHLPTEILTRVPWVDLFGCKNFCELWLSCLNLPDISLKYIVLGSSNGLLLCTRHIGWGETYCICNPITKKWLELPPFPPCENNMDVKVGFVCDPFYR FNEDDGSVSVNGQFGFKVVCLDASRHSEGEGIRDVNVELFSSQTGCWTTTYGVPLPDHIDGMIEILVEGHMVDYNGKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037105 [exp]	0	1
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	12.0	0.7856
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	12.9	0.7846
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	19.0	0.7612
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	22.5	0.7507
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10025665 [exp]	28.3	0.7244
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10035751 [exp]	31.7	0.7452
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	43.5	0.7219
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10033049 [exp]	49.4	0.6981
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10030956 [exp]	49.6	0.6891
AT5G06550			unknown protein		Lus10016202 [exp]	53.0	0.7188

Compare expression of checked genes

Lus10037105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.