Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26600 51 / 5e-09 CLE9 CLAVATA3/ESR-RELATED 9 (.1) AT1G69320 50 / 7e-09 CLE10 CLAVATA3/ESR-RELATED 10 (.1) AT1G73965 47 / 9e-08 CLE13 CLAVATA3/ESR-RELATED 13 (.1) AT1G68795 45 / 1e-06 CLE12 CLAVATA3/ESR-RELATED 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036960 [exp] 134 / 2e-41 AT1G69320 52 / 1e-09 CLAVATA3/ESR-RELATED 10 (.1) Lus10041496 [exp] 48 / 8e-08 AT1G68795 61 / 7e-13 CLAVATA3/ESR-RELATED 12 (.1) Lus10034267 [exp] 46 / 4e-07 AT1G68795 59 / 7e-12 CLAVATA3/ESR-RELATED 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093500 [exp] 50 / 9e-09 AT1G69320 62 / 1e-13 CLAVATA3/ESR-RELATED 10 (.1) Potri.010G130400 [exp] 47 / 1e-07 AT1G68795 65 / 1e-14 CLAVATA3/ESR-RELATED 12 (.1) Potri.008G115600 [exp] 47 / 2e-07 AT1G73965 67 / 1e-15 CLAVATA3/ESR-RELATED 13 (.1) Potri.010G160600 [exp] 47 / 5e-07 AT1G69320 48 / 1e-07 CLAVATA3/ESR-RELATED 10 (.1) Potri.012G059600 [exp] 44 / 2e-06 AT1G68795 59 / 3e-12 CLAVATA3/ESR-RELATED 12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037107 pacid=23152332 polypeptide=Lus10037107 locus=Lus10037107.g ID=Lus10037107.BGIv1.0 annot-version=v1.0 ATGAAGAAGACCACTTCACCATCACCGTCAACCGTGATCATCTCCGCCGCCGCCCTCCTCTTGTTTCTTTCCTTCTTCTTGTCCGCCCTCGAATCCTCAT CGTTACTATCATCTTCTTTTACTAATAAACCTACGTCACCACCACCACCGCCGCCGGTCCGCCGCCAGCTCTCCGCGGCTTCTTCCTGCATCAGCGCTGT CTGCCTCGAGCTTCGAAAAATGATCAAGTCCCGACGCCAACAAGCTGGCCGCCGTGAGAACAACAACTTCGCCGCCGGCGAGCATCAAGATCGTCAAGAA CAAGACATCGGCGGCGGGGGAGGTGGAGAGATAGACATGAGGTACGGCGTTGAGAAACGGTTGGTCCCTTCCGGCCCAAACCCTCTCCACAACTAG
AA sequence Show only first row Show all	>Lus10037107 pacid=23152332 polypeptide=Lus10037107 locus=Lus10037107.g ID=Lus10037107.BGIv1.0 annot-version=v1.0 MKKTTSPSPSTVIISAAALLLFLSFFLSALESSSLLSSSFTNKPTSPPPPPPVRRQLSAASSCISAVCLELRKMIKSRRQQAGRRENNNFAAGEHQDRQE QDIGGGGGGEIDMRYGVEKRLVPSGPNPLHN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73965		CLE13	CLAVATA3/ESR-RELATED 13 (.1)		Lus10037107 [exp]	0	1
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	9.3	0.6909
AT1G69320		CLE10	CLAVATA3/ESR-RELATED 10 (.1)		Lus10036960 [exp]	14.6	0.6888
AT2G02080	C2H2ZnF	ATIDD4	indeterminate(ID)-domain 4 (.1...		Lus10031928 [exp]	17.3	0.6342
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	23.7	0.6824
					Lus10041330 [exp]	25.5	0.6107
AT5G07030			Eukaryotic aspartyl protease f...		Lus10026171 [exp]	30.2	0.6597
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10027175 [exp]	41.0	0.6618
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10041344 [exp]	44.9	0.6347
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10035092 [exp]	45.2	0.6005
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	70.1	0.6003

Compare expression of checked genes

Lus10037107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.