Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61240 544 / 0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G13910 478 / 2e-171 Leucine-rich repeat (LRR) family protein (.1) AT3G11080 150 / 3e-40 AtRLP35 receptor like protein 35 (.1) AT1G35710 147 / 4e-39 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G20140 143 / 8e-38 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G12610 137 / 2e-37 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT5G46330 140 / 6e-37 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G36180 140 / 7e-37 Leucine-rich receptor-like protein kinase family protein (.1) AT2G25790 139 / 2e-36 Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 139 / 2e-36 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026651 [exp] 595 / 0 AT5G61240 549 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10004662 [exp] 578 / 0 AT5G61240 543 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10036961 [exp] 561 / 0 AT5G61240 488 / 1e-175 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10008712 [exp] 152 / 7e-41 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 151 / 1e-40 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10038381 [exp] 143 / 7e-39 AT4G20270 457 / 5e-152 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006045 [exp] 144 / 4e-38 AT2G25790 858 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10036242 [exp] 144 / 4e-38 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10036321 [exp] 142 / 2e-37 AT5G51350 957 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093400 [exp] 553 / 0 AT5G61240 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.010G160700 [exp] 550 / 0 AT5G61240 517 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.012G124300 [exp] 158 / 6e-43 AT4G08850 727 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.012G124100 [exp] 155 / 8e-42 AT4G08850 711 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.018G045500 [exp] 152 / 7e-41 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G237400 [exp] 151 / 1e-40 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.006G014232 [exp] 147 / 3e-39 AT1G53440 504 / 5e-161 Leucine-rich repeat transmembrane protein kinase (.1) Potri.019G060400 [exp] 147 / 3e-39 AT4G08850 728 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.005G117700 [exp] 145 / 8e-39 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G075000 [exp] 146 / 9e-39 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10037108 pacid=23152428 polypeptide=Lus10037108 locus=Lus10037108.g ID=Lus10037108.BGIv1.0 annot-version=v1.0 ATGGCGCGTCATCTCCTCCTCTTCCTCTTCGTCGGTCTCCTCAACACTCTCGCCCTCTCCAAAACCCTCAAACGCGACGTGAAGGCACTGAACGAGATCA AGTCGTCGCTGGGATGGAGAGTGGTGTACGCCTGGGTAGGAGACGACCCTTGCGGCGGCGACGGCCTCCAGCCTTGGTCCGGCGTCACCTGCTCCACTCA GGGAGATTACAGAGTCGTCACCGAATTGGAAGTGTATGCAGTGTCGATTGTCGGTCCATTTCCTACTGCGGTGACGAATCTGCTGGATCTCACCAGATTG GATTTTCATAACAACAAGCTGACAGGGCCGATCCCTCCTCAAATTGGGAGGTTGAAGCGTCTCAAGATACTGAATTTGAGGTGGAACAAGTTGCAAGATT CAATTCCTCCTGAAATCGGCGAACTTAAGAGTCTGACACATTTGTATTTGAGCTTCAATAACTTCAAAGGAGAGATTCCAAGGGAGCTAGCTAATCTTCC CGAGCTTCGGTATCTATACTTGCAAGAGAATAGGTTCTCGGGGAGAGTTCCTGCAGAATTGGGAACCTTGCAGAATCTTCGTCACTTAGATGTTGGCAAC AATCATTTGGTGGGTACTATAAGAGAACTAATCCGGATTGAGGGTTGTTTCCCTGCGCTTCGTAACCTCTATCTGAACAATAATTATTTTACTGGAGGAG TCCCTACGCAGCTAGCTAACTTGACAAACTTAGAAATCTTGCACCTATCCTATAACAAGATGACTGGAGTAATACCTATTGGACTTGCTTCCATCCCGAA GTTGACATATCTGTATTTGGATCACAATCAATTCACAGGAAGAATCCCTGAAGCCTTATATAAACATCAGTTCTTGAAAGAAATGTACATCGAAGGAAGC TCGTTCAAGCCTGGCGTAAACCCAATAGGCATGCACAAAGTCTTCGAAGTATCTGATGCAGATTTTGTAGTTTAA
AA sequence Show only first row Show all	>Lus10037108 pacid=23152428 polypeptide=Lus10037108 locus=Lus10037108.g ID=Lus10037108.BGIv1.0 annot-version=v1.0 MARHLLLFLFVGLLNTLALSKTLKRDVKALNEIKSSLGWRVVYAWVGDDPCGGDGLQPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPTAVTNLLDLTRL DFHNNKLTGPIPPQIGRLKRLKILNLRWNKLQDSIPPEIGELKSLTHLYLSFNNFKGEIPRELANLPELRYLYLQENRFSGRVPAELGTLQNLRHLDVGN NHLVGTIRELIRIEGCFPALRNLYLNNNYFTGGVPTQLANLTNLEILHLSYNKMTGVIPIGLASIPKLTYLYLDHNQFTGRIPEALYKHQFLKEMYIEGS SFKPGVNPIGMHKVFEVSDADFVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10037108 [exp]	0	1
AT2G45320			unknown protein		Lus10000786 [exp]	1.7	0.9193
AT3G62140			unknown protein		Lus10038035 [exp]	3.5	0.9158
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10001691 [exp]	5.1	0.8841
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10013053 [exp]	5.7	0.8848
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	6.5	0.9002
AT2G35035		URED	urease accessory protein D (.1...		Lus10007861 [exp]	7.2	0.8554
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10024110 [exp]	7.5	0.8955
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	7.7	0.8846
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10010324 [exp]	9.5	0.8853
					Lus10001241 [exp]	10.4	0.8957

Compare expression of checked genes

Lus10037108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.