Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61250 503 / 5e-175 ATGUS1 glucuronidase 1 (.1.2) AT5G07830 500 / 7e-174 ATGUS2 glucuronidase 2 (.1) AT5G34940 473 / 2e-163 ATGUS3 glucuronidase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036962 [exp] 1029 / 0 AT5G61250 501 / 8e-174 glucuronidase 1 (.1.2) Lus10036963 [exp] 707 / 0 AT5G07830 524 / 0.0 glucuronidase 2 (.1) Lus10037110 [exp] 698 / 0 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10004664 [exp] 687 / 0 AT5G07830 519 / 0.0 glucuronidase 2 (.1) Lus10015737 [exp] 492 / 2e-170 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 486 / 3e-168 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10021652 [exp] 484 / 3e-167 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 479 / 5e-166 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10008823 [exp] 462 / 1e-158 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160800 [exp] 627 / 0 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.015G049100 [exp] 484 / 2e-167 AT5G07830 731 / 0.0 glucuronidase 2 (.1) Potri.018G121500 [exp] 466 / 4e-160 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 456 / 4e-156 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 440 / 6e-150 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03662 [flax] [poplar] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037109 pacid=23152293 polypeptide=Lus10037109 locus=Lus10037109.g ID=Lus10037109.BGIv1.0 annot-version=v1.0 ATGAAGGACCCGGACGAAATCACCGTCACGATCAAATCAGGCGCCGCTGTATCCCACACCGCCGACGACTACGTCTGCGCAACTCTCGATTGGTGGAGGA AAGACAAATGCGATTACCGACACTGCCCGTGGGGAAACGCAGGAATTCTTGATGTGGATCTTAACAATACACTTTTGGCAAAAGCTATCAAGGCTTTTGA TCCGTTGAGGCTTAGAGTGGGAGGATCGTTGCAGGATCTGGTGACTTATGAAGTTGGAGGAGCTGTCGGTGTTCATCCCAGCTTCGTGAAGGACAAAGAT GTGATGCTTGGGTTCAAACCGGGGTCTCTTCCCATGAAAAGATGGGACGAGCTTAACGAATTCTTCGCTAAAACTAATACCAAAGTCATTTTTGGTTTGA ATGAGCTTTCTGGCAAGAAAAAGGAAAACAAATCCACGACTCAAATGGTAGGAGACTGGGACCCTACTAATGCTCGCGATTTCATGAACTACACTGTTCA AAAGGGATACAAGATTGATGCCTATGAATTGGGAAATGAGTTGTGTGGCGATGGAGTAGATGCTAAGATAGATCCGGAGCAGTATGCAAAAGATACTAAA GAGCTAAGGAAAGTCTTGAATGAATTGTACCCGGATCCTAAGTCCAGGCCACAAGTTCTGGCTCCTGGAGGTTTCTTTTTCAAGGAATGGTTCAAAACCT ACCTTCGTGCTTGCGGACCGAACGTTATCGATGGCGTAACCCACCATGTCTACAATCTTGGAACAGGTGGTGATCCGAAGATAATAGACAGGATTCAAGA TCCACATTTCCTGAGCGAGGTAGTTCAGCTGTACAGGGACGTTCAGGAAGTAGCGGAGCAGTCTGGATCAGGAGCATCTCCTTGGGTCGGAGAGGGAGGC GGAGCTTACCTCAGCGGTGGCATAAATGTTCAATCCACTTTCGTTGATGGATACTGGTACTTGGATCAGCTTGGCTTGGCCGCAGTTCATAGCCATAAGG CCTACTGCAGACAAGCCATTGTTGGTGGAAACTATGGCTTCCTAAAAAATGACGTCTTTACTCCTAACCCTGATTACTACGGAGCACTATTATGGCATCG ATTGATGGGGACCGGAGTTCTAGCAACCAGCCACAACGGATCTCCATTCCTTCGGGCATATTCACATTGCTCTAAGAAGAAGTCTGGAGTTACTCTGATG CTGATCAACATGTCGAAAACTTCGACATTCCATATCACGATCACCGACGAATTGAACAACCACCACAAGGATTCTGATTCAAACCATCTCAAAGAGGAAA GAGAGGAGTACCATTTGACACCAGAAGGAGGAAATATCACGAGTGATGTCGTTCTTCTGAATGGAGTTCCGTTGCAGCTTACAGCTTCCGGTGACATCCC AGAGATGCCTCCGAGGCTTGTCCCAGCTTCATCTCCGGTGACAATGGTTCCTGGCTCTTTTGTTTATGTCTCCGTTAAGGATTTCAAGGCCCCTGCCTGC TGA
AA sequence Show only first row Show all	>Lus10037109 pacid=23152293 polypeptide=Lus10037109 locus=Lus10037109.g ID=Lus10037109.BGIv1.0 annot-version=v1.0 MKDPDEITVTIKSGAAVSHTADDYVCATLDWWRKDKCDYRHCPWGNAGILDVDLNNTLLAKAIKAFDPLRLRVGGSLQDLVTYEVGGAVGVHPSFVKDKD VMLGFKPGSLPMKRWDELNEFFAKTNTKVIFGLNELSGKKKENKSTTQMVGDWDPTNARDFMNYTVQKGYKIDAYELGNELCGDGVDAKIDPEQYAKDTK ELRKVLNELYPDPKSRPQVLAPGGFFFKEWFKTYLRACGPNVIDGVTHHVYNLGTGGDPKIIDRIQDPHFLSEVVQLYRDVQEVAEQSGSGASPWVGEGG GAYLSGGINVQSTFVDGYWYLDQLGLAAVHSHKAYCRQAIVGGNYGFLKNDVFTPNPDYYGALLWHRLMGTGVLATSHNGSPFLRAYSHCSKKKSGVTLM LINMSKTSTFHITITDELNNHHKDSDSNHLKEEREEYHLTPEGGNITSDVVLLNGVPLQLTASGDIPEMPPRLVPASSPVTMVPGSFVYVSVKDFKAPAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10037109 [exp]	0	1
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10026662 [exp]	2.4	0.8288
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10022557 [exp]	3.9	0.8012
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	4.9	0.8135
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	6.8	0.8274
AT3G49730			Tetratricopeptide repeat (TPR)...		Lus10039021 [exp]	9.4	0.7692
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10039206 [exp]	9.9	0.7822
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	11.1	0.8148
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10004807 [exp]	11.2	0.7963
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10007715 [exp]	11.6	0.7767
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10013344 [exp]	13.4	0.7756

Compare expression of checked genes

Lus10037109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.