Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07830 473 / 8e-163 ATGUS2 glucuronidase 2 (.1) AT5G61250 470 / 8e-162 ATGUS1 glucuronidase 1 (.1.2) AT5G34940 439 / 8e-150 ATGUS3 glucuronidase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036963 [exp] 880 / 0 AT5G07830 524 / 0.0 glucuronidase 2 (.1) Lus10004664 [exp] 733 / 0 AT5G07830 519 / 0.0 glucuronidase 2 (.1) Lus10036962 [exp] 645 / 0 AT5G61250 501 / 8e-174 glucuronidase 1 (.1.2) Lus10037109 [exp] 642 / 0 AT5G61250 503 / 7e-175 glucuronidase 1 (.1.2) Lus10021652 [exp] 477 / 2e-164 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 475 / 1e-163 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10015737 [exp] 473 / 8e-163 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 471 / 2e-162 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10008823 [exp] 428 / 8e-145 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160800 [exp] 635 / 0 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.015G049100 [exp] 479 / 2e-165 AT5G07830 731 / 0.0 glucuronidase 2 (.1) Potri.018G121500 [exp] 446 / 3e-152 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 441 / 3e-150 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 426 / 4e-144 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03662 [flax] [poplar] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037110 pacid=23152325 polypeptide=Lus10037110 locus=Lus10037110.g ID=Lus10037110.BGIv1.0 annot-version=v1.0 ATGGCAGCTTTCAGAGCTTTCCTCGTCTACTCACTCCTCCTCTCGACCCTCTCCGCGCTATGCTTCTCTGACACTTCCAGCATCACCGTCACGGTACAGT CAGTGACCACCATTGCGAAAACAGACAGCGATTTCATCTGTGCAACTCTAGATTGGTGGCCCAAGAACAAGTGTGATTATAACCAGTGCCCTTGGGGACA AACCAGCGCCCTGAATCTGGATCTGAACAACACCAATCTGGCAACTGCTATCAAAGCTTTCGATCCGTTGAGGATTAGGGTTGGCGGGTCGTTGGAGGAT CTGGTGGTTTACAAAGTTGGGAAAGCGATCAAGAGATTCCCAAAGTTTAAGAAGCTGAAAGGTGGGATGTTTGGGTTCAGTAGAGGTACTCTCACCATGG ATAGATGGGATCAGCTCAATCAGCTTTTCACCAAAACAAATACCAAAGTCATCTTTGGCCTCAACGCTTTGGTTGGGAAGAGAAGGAAAGACGAATCTTC CACTCTGTGGATTGGAGACTGGAATCCGCAGAATGCTCGCGATTTCATGAACTATACTGTTCAGAAGGGCTACAAAATCGACTCTTATGAACTCGGAAAT GAGCTGAGCGGCTCGGGGGTTTCTGCCCGGGTGGAACCTGAGCAGTACGCTAAGGACACAATCAAAGTCAGGAAAGCTGTAAATGAATTATACCCAGATC CCAATTCCAGGCCTTTAGTATTGGGTCCTGCCGGATTCTTTGATAAGGAATGGTTCAAGAAGTACCTTCAAGCTGTCGGACCAAACGTTGTCGATGGCGT AACCCACCACATTTACAATCTCGGGGCAGGTGTGGATTCCAATCTGATCAATAAGGTTCAAGATCCGTTCTTTCTCGACAAAGTGGCTCAGACTTTCAAG GACGTTAAGGATGTTGTCGAGCAATCCGGTACCCCTGCAGCTCCGTGGGTCGGGGAATCGGGTGGAGCTTTCAACAGCGGTGGAAAGGACGTTTCAAACA CTTTCGCCAATGGGTTCTGGTACTTGGATCAGCTCGGTATGACCTCGACTTTCGGCTATAAGGCTTACTGCAGACAGTCTCTTGTTGGTGGAAACTACGG ATTGCTCAGGAGTGATACTTTCACTCCAAATCCTGACTACTATGGTGCACTTTTGTGGCATCGGTTGATGGGTACCGGAGTTTTGAGAACTATCCATGAC GAGTCTCCATACCTGAGAGCATACTCACATTGCTCCAAGAAAAATTCTGGAGTGACTTTGCTGCTGATCAACATGTCGAATTCGACGACATTCAACATCT GGGTGAACAACGATCTAAACCTGTACCGAAAAACGGCCGATTCAGCCACCCTGACGGAGGACAGGGAAGAGTACCATCTGACATCGGAAGGAGGGAACAT TCAGAGCGATGTTGTGCTGCTGAACGGGATTCCATTGAAGCTGAAGAGCTGCGGCGAGATTCCGAAGATGGATCCGAAGCTCGTACCGTCTTCGTCCCCG GTTAGCGTTGCTCCGGATTCGTTCGCTTATGTCAACATTAAGGATTTCAAGGCGCCTGCTTGCTAG
AA sequence Show only first row Show all	>Lus10037110 pacid=23152325 polypeptide=Lus10037110 locus=Lus10037110.g ID=Lus10037110.BGIv1.0 annot-version=v1.0 MAAFRAFLVYSLLLSTLSALCFSDTSSITVTVQSVTTIAKTDSDFICATLDWWPKNKCDYNQCPWGQTSALNLDLNNTNLATAIKAFDPLRIRVGGSLED LVVYKVGKAIKRFPKFKKLKGGMFGFSRGTLTMDRWDQLNQLFTKTNTKVIFGLNALVGKRRKDESSTLWIGDWNPQNARDFMNYTVQKGYKIDSYELGN ELSGSGVSARVEPEQYAKDTIKVRKAVNELYPDPNSRPLVLGPAGFFDKEWFKKYLQAVGPNVVDGVTHHIYNLGAGVDSNLINKVQDPFFLDKVAQTFK DVKDVVEQSGTPAAPWVGESGGAFNSGGKDVSNTFANGFWYLDQLGMTSTFGYKAYCRQSLVGGNYGLLRSDTFTPNPDYYGALLWHRLMGTGVLRTIHD ESPYLRAYSHCSKKNSGVTLLLINMSNSTTFNIWVNNDLNLYRKTADSATLTEDREEYHLTSEGGNIQSDVVLLNGIPLKLKSCGEIPKMDPKLVPSSSP VSVAPDSFAYVNIKDFKAPAC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10037110 [exp]	0	1
AT4G04980			unknown protein		Lus10033704 [exp]	1.7	0.7483
AT5G60880		BASL	breaking of asymmetry in the s...		Lus10017880 [exp]	3.9	0.7138
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Lus10022934 [exp]	4.7	0.7592
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017176 [exp]	6.9	0.7520
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10005516 [exp]	7.7	0.7440
AT1G09600			Protein kinase superfamily pro...		Lus10028890 [exp]	10.0	0.7306
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10019238 [exp]	13.1	0.6405
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	13.9	0.7175
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	15.0	0.7175
					Lus10003941 [exp]	16.0	0.7175

Compare expression of checked genes

Lus10037110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.