Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13920 55 / 2e-08 Remorin family protein (.1) AT1G69325 44 / 2e-05 Remorin family protein (.1) AT5G61280 41 / 0.0004 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036964 [exp] 305 / 4e-104 AT1G13920 87 / 2e-19 Remorin family protein (.1) Lus10026649 [exp] 98 / 2e-23 AT1G13920 97 / 2e-22 Remorin family protein (.1) Lus10004665 [exp] 97 / 3e-23 AT1G13920 96 / 4e-22 Remorin family protein (.1) Lus10034714 [exp] 40 / 0.0008 AT5G61280 98 / 5e-24 Remorin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G160900 [exp] 81 / 2e-17 AT1G13920 99 / 1e-23 Remorin family protein (.1) Potri.008G093300 [exp] 75 / 4e-15 AT1G13920 80 / 1e-16 Remorin family protein (.1) Potri.015G049700 [exp] 49 / 7e-07 AT5G61280 113 / 2e-30 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10037111 pacid=23152625 polypeptide=Lus10037111 locus=Lus10037111.g ID=Lus10037111.BGIv1.0 annot-version=v1.0 ATGGGGATTGAACAAGCCATTGCAGTAGCAGCAGCTGCATTAGCCATTGCTGTTATTGAAGAAGAACAAGAGGCAAAACGGACATTTCAGGAAGCAGCTG CTCATCAATCCTCTGCCACCAAGATCAGGAGTCAACAAAGCCAAGGTTTGCAAGGTACTGGTTCCCAATCAAGTTCAGTATCAATAAGGTATATAGCAGG GACTTCATCAGATAGCAATAGAGATGACGATGATGAAACAACACCTGGAAAGGTCCTTGTTCCGATTTCTTCGATGGCTAGCACTAATTCGACGTTAGCT GATAAGCCGATGAAGAAAGCTCCAAGCTTTAATGAAACCCCTAATGCTTCATCTATCAAGAAGACACCCTCATTTGTGGATAAACCTGTTTTGTCAACGC CAACTTCCACCAAAGCTGGGATGCCATTGAAGAGACCTGAAGCTTCATCAACTGCAAAACCTGCTGCAACAGGTAAGCCAGCTGGAATCCAAGTATCTTC TTCCCAAGCAGCAGATGCATGGGAGAAAGAGCAGCTGGAGAAGCTGAAAGGGAAGTATAAGCAGCAGAATGATCATATCGTTTCGTGGGAGGACGCAAAG AAGGCTAAAGCAAGGCGTCGACTCGACAGAGCTGAGAGTGAAATGGAGAGGAGCAGGCTGAGAGCATTGGAGAAGTTTCGGGGGGACATGGAGATTGTGG GTAAGATTGCAGGAGGAGCAAAGGCCAAGACTGCCGAGAGGATGAAGAAGGAAGAGGTTAAGGTGAAGGAGAAAGCTGACGCTATCAGAAGAAAAAGTGG CAAATTCCCAGCAAGAAGGCCTTGTTTCTGCATCTGA
AA sequence Show only first row Show all	>Lus10037111 pacid=23152625 polypeptide=Lus10037111 locus=Lus10037111.g ID=Lus10037111.BGIv1.0 annot-version=v1.0 MGIEQAIAVAAAALAIAVIEEEQEAKRTFQEAAAHQSSATKIRSQQSQGLQGTGSQSSSVSIRYIAGTSSDSNRDDDDETTPGKVLVPISSMASTNSTLA DKPMKKAPSFNETPNASSIKKTPSFVDKPVLSTPTSTKAGMPLKRPEASSTAKPAATGKPAGIQVSSSQAADAWEKEQLEKLKGKYKQQNDHIVSWEDAK KAKARRRLDRAESEMERSRLRALEKFRGDMEIVGKIAGGAKAKTAERMKKEEVKVKEKADAIRRKSGKFPARRPCFCI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13920			Remorin family protein (.1)		Lus10037111 [exp]	0	1
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10010944 [exp]	1.7	0.9790
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10031386 [exp]	2.4	0.9783
AT3G18260			Reticulon family protein (.1)		Lus10032451 [exp]	3.5	0.9782
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10022608 [exp]	4.9	0.9356
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009316 [exp]	5.7	0.9693
AT1G13920			Remorin family protein (.1)		Lus10026649 [exp]	6.5	0.9621
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10017204 [exp]	6.6	0.9215
AT3G24110			Calcium-binding EF-hand family...		Lus10016675 [exp]	7.2	0.8806
AT1G13920			Remorin family protein (.1)		Lus10036964 [exp]	7.7	0.9251
AT1G13920			Remorin family protein (.1)		Lus10004665 [exp]	8.4	0.9625

Compare expression of checked genes

Lus10037111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.