Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 176 / 1e-51 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 175 / 3e-51 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT3G16370 164 / 2e-47 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G53100 163 / 4e-47 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 163 / 1e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 162 / 1e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 162 / 2e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 161 / 3e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 160 / 8e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 160 / 9e-46 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037113 [exp] 571 / 0 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1) Lus10036966 [exp] 563 / 0 AT3G04290 198 / 3e-60 Li-tolerant lipase 1 (.1) Lus10023980 [exp] 258 / 2e-83 AT5G55050 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 258 / 2e-83 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025104 [exp] 258 / 3e-83 AT5G55050 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 253 / 1e-81 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026647 [exp] 214 / 4e-66 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026645 [exp] 201 / 2e-61 AT5G55050 154 / 2e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10004668 [exp] 198 / 3e-60 AT5G55050 184 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180400 [exp] 285 / 3e-94 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 269 / 2e-87 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 199 / 8e-61 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 175 / 2e-51 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G068700 [exp] 170 / 2e-49 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024800 [exp] 167 / 3e-48 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.009G151000 [exp] 166 / 3e-48 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G253400 [exp] 166 / 7e-48 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 165 / 8e-48 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G051100 [exp] 162 / 2e-46 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10037112 pacid=23152525 polypeptide=Lus10037112 locus=Lus10037112.g ID=Lus10037112.BGIv1.0 annot-version=v1.0 ATGGCCACGAAATTCAGAGTTTCGTCGGCGATACTACTTGTTTGCACTATTACACTATGTTCGTCCTCGGCTTCTACTATCCCGGCGGTGTACCTATTTG GGGACTCGGTATTCGACGTCGGGACCAATGATTACTTGGCGGCGAGCACGGTGACGGCTAGCTTCCCGTTTTATGGGATTGATTCTTCTTCTTCTTTGCC CATTGGAAGGTTCAGCAATGGTTTCAATCTTGCTGACTATCTTGTACAGAAGATGGGGTTCCATAGAAGTCCGCCGCCGTTCCTCTCCCTCGTCGCCGGC GGTAAATGCAGTAAAAAATTCAACCAAACCATAACAAGGGGGGTCAACTTCGCCTCAGGCGGCAGCGGAATTTTCGACTCAACCGGCCCTACCTCCAGTG TGGTGCCTATGAAAACGCAGATAGAACAATTTATTACGGTGGCTTCAAACCTGTCGGCATTGTTAGGTCCGAAGGCGGCCTCCACCTTGCTGGCGGAGTC CGTGTTTCTCATCAGCTCCGGAAGCAACGACATCTTCGATTACCTACAAAATCTTACCGCGGACCCTACTACGCCACCTTTCAACATCTCCGGCAAGGAG TTGGTTACCTCTTTGGTTGAGGAATACGGAGCCCAACTTCAGGATTTGTATATATATGGAGCTAAAAAGTTCGGGATAGTGGCGATTCCGGCGGTTGGGT GCTGCCCATTTGCGAGATCATTCAACGACACCGGCGGCTGCATCGACGGAGCAAATCTGCTGGCTCAAGCTTTCTTCGACGGCGTGACTCTAGCTTCTAA CAAGCTTGGGGAGTTCGCGCCCGACGCTAAGGTCTCCCTCGGAAACGCCTTCAGCATTTCTCTGGATTTCATCACCAACGGCGCCTTGTTTGGTATAAAA GAGTTGAAAGTCCAGTGTTGCGGGGAGGGAAGTGGGGCGTGCAACCAAACGTCTACCATTTGTGGGAACCGTGACGAACATTTGTTTTGGGATGGCTTTC ACCCGACCGAGTTCGCCATCAAGTTGTCGGCCGAGGTGTTCTTAGGCAACGACCCTAGATACGTATCTCCTTTCGGTTTCGGACAGCTTTGA
AA sequence Show only first row Show all	>Lus10037112 pacid=23152525 polypeptide=Lus10037112 locus=Lus10037112.g ID=Lus10037112.BGIv1.0 annot-version=v1.0 MATKFRVSSAILLVCTITLCSSSASTIPAVYLFGDSVFDVGTNDYLAASTVTASFPFYGIDSSSSLPIGRFSNGFNLADYLVQKMGFHRSPPPFLSLVAG GKCSKKFNQTITRGVNFASGGSGIFDSTGPTSSVVPMKTQIEQFITVASNLSALLGPKAASTLLAESVFLISSGSNDIFDYLQNLTADPTTPPFNISGKE LVTSLVEEYGAQLQDLYIYGAKKFGIVAIPAVGCCPFARSFNDTGGCIDGANLLAQAFFDGVTLASNKLGEFAPDAKVSLGNAFSISLDFITNGALFGIK ELKVQCCGEGSGACNQTSTICGNRDEHLFWDGFHPTEFAIKLSAEVFLGNDPRYVSPFGFGQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10037112 [exp]	0	1

Compare expression of checked genes

Lus10037112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.