Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04290 192 / 7e-58 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G55050 181 / 2e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 179 / 1e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 172 / 4e-50 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 171 / 1e-49 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G37690 169 / 6e-49 SGNH hydrolase-type esterase superfamily protein (.1) AT4G28780 169 / 6e-49 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 169 / 7e-49 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 168 / 1e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G18430 166 / 1e-47 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036966 [exp] 695 / 0 AT3G04290 198 / 3e-60 Li-tolerant lipase 1 (.1) Lus10037112 [exp] 571 / 0 AT5G55050 176 / 1e-51 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 271 / 2e-88 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 269 / 1e-87 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023980 [exp] 260 / 5e-84 AT5G55050 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025104 [exp] 259 / 8e-84 AT5G55050 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026647 [exp] 216 / 6e-67 AT5G55050 159 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021540 [exp] 209 / 5e-64 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026645 [exp] 204 / 2e-62 AT5G55050 154 / 2e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180400 [exp] 281 / 3e-92 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 279 / 4e-91 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 213 / 5e-66 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 186 / 2e-55 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024800 [exp] 182 / 7e-54 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.017G130100 [exp] 181 / 8e-54 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.019G076600 [exp] 181 / 2e-53 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024700 [exp] 179 / 1e-52 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.004G086700 [exp] 175 / 3e-51 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.012G068700 [exp] 173 / 2e-50 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10037113 pacid=23152604 polypeptide=Lus10037113 locus=Lus10037113.g ID=Lus10037113.BGIv1.0 annot-version=v1.0 ATGGCGACGGCATTCAGGGTTTCGTCGGCAATACTACTTGTTTGCTTCTTGTTTCTCAATATTGATAACAACCACCTCTGTGTTTCATGTTCACCGTCGT CGGCTTGTACTTTCCCGGCGGTGTACATATTTGGGGACTCGATAGTCGATGTCGGGACCAATGATTACTTGCCGGCGAGCACGGCCACGGCTAGCTTCCC GTTTTATGGGATTGACTCTTCTTCTTCTTTGCCCATTGGAAGGTTCAGCAATGGCTTCAATCTTGCTGACCAAATCGTAAAGAAGATGGGGTTCACCGGA AGTCCGCCGCCTTTCCTCTCCCTCGTCGCCGGCGGGGCCTGCAGTAAAAAATTTAACGAAACCATAACAAAGGGCGTCAACTTCGCCTCAGCCGGTTGTG GAATTTTCGACTCGACCGGCTTGACCATCGGAGTGGTGCCTTTAAAAACCCAGATAGAACAATTTACGACGGTGGCCGCAAACCTGTCGGCATTGCTAGG CCCGACTGCAGCTGCCACCCTGATCGCGGAGTCTGTGTTTCTCATCAGCGTTGGAAGCAACGACATCTTCAATTATATACGAAATCTCTCCTCCTTCCCC GCTGCTCCTCATTTCAACGTCTCCGGCAAAGAGTTGGTCACCTCTTTGATTACGGAATACGGCGGCCATCTTCAGGAATTATATTTAAACGGAGCAAAGA AGTTCGCGATAGTGGCGATTCCGGCACTTGGGTGCTGCCCATTTGCGCGATCGTTCAACGAAACCGGGGGCTGCATCGACGGAGCGAATTCGCTGGCTCA AGCTTTCTTCGACGGTGTCACTCTGGCTTCTAAGAAACTTGCGGAGTTAGCTCCCGACGTTAAGTTCTCCCTCGGTAACGCCTTCAACATCACTATGGAT TTCATCAACCACGGTGCCGTGCATGGTTTGAAAGAGGTGAAAGTCCCGTGTTGCGGAGAAGGAAGCACAGCGTGCAACCAAACATCTACCCTTTGTCGGA ATCGCGACGAACATTTGTTTTGGGACGGCTTTCACCCGACCGAGTTCGTCACCAAATTGTCTGCCAGTGCGTTTTTCGGCAATGATTCTAGATTTGTATC TCCTATCGGATTCGGGCAGCTCTGA
AA sequence Show only first row Show all	>Lus10037113 pacid=23152604 polypeptide=Lus10037113 locus=Lus10037113.g ID=Lus10037113.BGIv1.0 annot-version=v1.0 MATAFRVSSAILLVCFLFLNIDNNHLCVSCSPSSACTFPAVYIFGDSIVDVGTNDYLPASTATASFPFYGIDSSSSLPIGRFSNGFNLADQIVKKMGFTG SPPPFLSLVAGGACSKKFNETITKGVNFASAGCGIFDSTGLTIGVVPLKTQIEQFTTVAANLSALLGPTAAATLIAESVFLISVGSNDIFNYIRNLSSFP AAPHFNVSGKELVTSLITEYGGHLQELYLNGAKKFAIVAIPALGCCPFARSFNETGGCIDGANSLAQAFFDGVTLASKKLAELAPDVKFSLGNAFNITMD FINHGAVHGLKEVKVPCCGEGSTACNQTSTLCRNRDEHLFWDGFHPTEFVTKLSASAFFGNDSRFVSPIGFGQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10037113 [exp]	0	1
					Lus10002449 [exp]	3.6	1.0000
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10002972 [exp]	5.3	1.0000
AT1G45191		BGLU1	beta glucosidase 1, Glycosyl h...		Lus10030372 [exp]	7.2	1.0000
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10006195 [exp]	7.2	1.0000
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10037666 [exp]	7.9	0.9976
					Lus10006079 [exp]	8.3	1.0000
AT5G19580			glyoxal oxidase-related protei...		Lus10011111 [exp]	9.5	1.0000
					Lus10010414 [exp]	11.2	1.0000
					Lus10025056 [exp]	12.2	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	12.2	1.0000

Compare expression of checked genes

Lus10037113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.