Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01390 47 / 4e-06 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036967 [exp] 358 / 8e-124 AT4G01070 172 / 3e-48 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10037117 [exp] 251 / 5e-83 AT1G78270 143 / 2e-38 UDP-glucosyl transferase 85A4 (.1) Lus10036969 [exp] 251 / 3e-80 AT1G78270 190 / 3e-53 UDP-glucosyl transferase 85A4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126000 [exp] 121 / 3e-32 AT3G16520 192 / 9e-56 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G089000 [exp] 119 / 1e-31 AT3G16520 174 / 3e-49 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.002G168600 [exp] 40 / 0.0007 AT4G01070 595 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037115 pacid=23152417 polypeptide=Lus10037115 locus=Lus10037115.g ID=Lus10037115.BGIv1.0 annot-version=v1.0 ATGTCAACAACCACCACCGCCGATTCCCTCCTCCGCCGTCCCTCTGCCCACGTCGCCCTCCTCCCAAGCTCCGGCGCCGGCCACCTCATGCCATTCCTCC GCCTAGCCGCAAACTTACTGAGTCAAGACTGCCACGTCACCCTAATCACCAGCCACCCAATCGTATCTCAGGCAGAGTCATCTCTCATTTCCAAATTCCT CGCCGCTTACCCACAAGTCTCCGAGCAGCAGTTCCACAACTCCACTGACCCCTTTTGCCTCAAGTGGGAAGCCATCCGCCGATCCCTCCCAAACTTATCT TCCATCCTCTCTTCTCTTTCCCCGCCGCCAGCGGCTCTGTTCTCCGACGTATCGTTACTCTCCTCCACCATCTCCGTCACCCAACCTCTCAACATCCCTA ACTACATCCTCTACGTGTCCTCTGCCAGAATGTTTTATTTTCTCTCCCATTACCCTAATTTATCCAAAACCCAACTGGAATCCGCCGGGAAATTCGAAGT CCCCGGAATCGGAGACGTGTCCAGATCGTCGATCCCGCCGGTGCTTCTAAACCCGGAGACTCTGTTCTCCAGCTTGTTCAAATCCAGCGGCGAGTGTCTC TCCAAATTCGATGGAGTGGTCGTTTGA
AA sequence Show only first row Show all	>Lus10037115 pacid=23152417 polypeptide=Lus10037115 locus=Lus10037115.g ID=Lus10037115.BGIv1.0 annot-version=v1.0 MSTTTTADSLLRRPSAHVALLPSSGAGHLMPFLRLAANLLSQDCHVTLITSHPIVSQAESSLISKFLAAYPQVSEQQFHNSTDPFCLKWEAIRRSLPNLS SILSSLSPPPAALFSDVSLLSSTISVTQPLNIPNYILYVSSARMFYFLSHYPNLSKTQLESAGKFEVPGIGDVSRSSIPPVLLNPETLFSSLFKSSGECL SKFDGVVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01390			UDP-Glycosyltransferase superf...		Lus10037115 [exp]	0	1
AT5G54000			2-oxoglutarate (2OG) and Fe(II...		Lus10008822 [exp]	3.2	0.8523
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10022196 [exp]	3.5	0.8702
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10037266 [exp]	6.6	0.8373
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	7.3	0.8302
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	9.5	0.8349
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10002557 [exp]	9.6	0.8423
AT2G35760			Uncharacterised protein family...		Lus10038800 [exp]	12.7	0.7905
AT2G44800			2-oxoglutarate (2OG) and Fe(II...		Lus10011002 [exp]	13.7	0.7464
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Lus10012896 [exp]	14.3	0.8053
					Lus10017791 [exp]	14.5	0.8231

Compare expression of checked genes

Lus10037115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.