Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03430 261 / 1e-88 Ankyrin repeat family protein (.1) AT1G07710 66 / 2e-12 Ankyrin repeat family protein (.1) AT4G27780 64 / 1e-11 ACBP2 acyl-CoA binding protein 2 (.1) AT3G04710 64 / 1e-11 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT5G37500 61 / 2e-10 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT3G09550 60 / 3e-10 Ankyrin repeat family protein (.1) AT4G35450 59 / 5e-10 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT3G58760 57 / 2e-09 Integrin-linked protein kinase family (.1) AT5G53470 57 / 2e-09 ACBP1 acyl-CoA binding protein 1 (.1) AT5G60070 57 / 2e-09 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036968 [exp] 220 / 3e-73 AT2G03430 216 / 7e-72 Ankyrin repeat family protein (.1) Lus10003748 [exp] 67 / 1e-12 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10028039 [exp] 63 / 2e-11 AT3G02850 60 / 1e-17 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10014522 [exp] 63 / 2e-11 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10029277 [exp] 62 / 5e-11 AT4G18950 601 / 0.0 Integrin-linked protein kinase family (.1) Lus10005910 [exp] 61 / 1e-10 AT4G27780 430 / 3e-151 acyl-CoA binding protein 2 (.1) Lus10022382 [exp] 60 / 3e-10 AT4G27780 432 / 2e-152 acyl-CoA binding protein 2 (.1) Lus10015687 [exp] 60 / 3e-10 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10037694 [exp] 60 / 3e-10 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161300 [exp] 303 / 4e-105 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.002G213200 [exp] 69 / 2e-13 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.015G010200 [exp] 67 / 9e-13 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1) Potri.013G042300 [exp] 65 / 5e-12 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.012G017700 [exp] 64 / 5e-12 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1) Potri.013G062000 [exp] 60 / 2e-10 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 60 / 3e-10 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.005G054800 [exp] 59 / 6e-10 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.007G099600 [exp] 59 / 6e-10 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.003G018800 [exp] 58 / 1e-09 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10037116 pacid=23152312 polypeptide=Lus10037116 locus=Lus10037116.g ID=Lus10037116.BGIv1.0 annot-version=v1.0 ATGGAGATAGATCCTCCGACGCAAGCTTCTGAGATCCCTCAGATCAAAGACGAAGACCTATTCAAAGCCGCTGAGACCGGCGATTGTTCGGTCCTCAGCT TGCTCCCTCCGCCGCAGCTCACAAAATCCCTCTCCCTCCGGAACGACGACCGCCGCTCCCTCCTCCACGTCGCCTCTTCCTCCGGTCACACTGAGGCGGT GAAGATTCTATTAGAGGTTGAAGGATCTGAAAGCGTTGTGAACATCACGGACGAGGAAGGTTGGGCGCCTCTGCACTCCGCCTCTAGCATTGGCAGTGTT CCGATCGTCGAAATTTTGTTGAGTAAAGGTGCGGATGTGAATTTGAAGAACGGTGGAGGACGAACTGCGCTCCACTATGCTGCGAGCAAGGGATGGTTGA AGATTGCTGAAGTGTTGATTGCACATGCGAGTGTCGGGAAGGCGGAGTTGTGCGAATTCTTAGTTGAGGAAGGAGCAGAGGTTGATGCTGTGGATAGAGC TGGTCAAACTCCTCTTATGAATGCTGTGATTTGCGACAATAGAGAGGTAGCTCTTCTTCTAATAAGGCATGGAGCAGATGTGAATGCGGAGGACAAAGAA GAATACACTGTGCTTGGTCGAGCTTCGCGCGACTTTAGGGATATTCTCATTGATGCTGCAAAAGCCATGCTTGAAGGGTGA
AA sequence Show only first row Show all	>Lus10037116 pacid=23152312 polypeptide=Lus10037116 locus=Lus10037116.g ID=Lus10037116.BGIv1.0 annot-version=v1.0 MEIDPPTQASEIPQIKDEDLFKAAETGDCSVLSLLPPPQLTKSLSLRNDDRRSLLHVASSSGHTEAVKILLEVEGSESVVNITDEEGWAPLHSASSIGSV PIVEILLSKGADVNLKNGGGRTALHYAASKGWLKIAEVLIAHASVGKAELCEFLVEEGAEVDAVDRAGQTPLMNAVICDNREVALLLIRHGADVNAEDKE EYTVLGRASRDFRDILIDAAKAMLEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03430			Ankyrin repeat family protein ...		Lus10037116 [exp]	0	1
AT3G17800			Protein of unknown function (D...		Lus10017989 [exp]	3.5	0.9061
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	3.9	0.9244
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Lus10003041 [exp]	4.2	0.9113
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	5.8	0.9180
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030601 [exp]	7.7	0.9049
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Lus10040239 [exp]	8.7	0.8913
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10000640 [exp]	11.4	0.9001
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10017374 [exp]	11.6	0.9014
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10029220 [exp]	14.4	0.8912
AT4G15490		UGT84A3	UDP-Glycosyltransferase superf...		Lus10019809 [exp]	15.9	0.8843

Compare expression of checked genes

Lus10037116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.