Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78270 128 / 8e-33 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G16520 122 / 3e-31 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT1G01390 114 / 4e-28 UDP-Glycosyltransferase superfamily protein (.1) AT1G51210 113 / 6e-28 UDP-Glycosyltransferase superfamily protein (.1) AT4G15280 112 / 2e-27 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21790 112 / 2e-27 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 112 / 3e-27 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT2G29740 112 / 3e-27 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT1G05675 108 / 3e-26 UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 108 / 6e-26 UGT71B6 UDP-glucosyl transferase 71B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036969 [exp] 631 / 0 AT1G78270 190 / 3e-53 UDP-glucosyl transferase 85A4 (.1) Lus10036967 [exp] 462 / 2e-162 AT4G01070 172 / 3e-48 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10037115 [exp] 242 / 3e-79 AT1G01390 59 / 2e-10 UDP-Glycosyltransferase superfamily protein (.1) Lus10039301 [exp] 155 / 1e-42 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039302 [exp] 145 / 3e-39 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027542 [exp] 135 / 1e-35 AT3G16520 431 / 3e-148 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10026795 [exp] 134 / 3e-35 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10003900 [exp] 133 / 2e-34 AT4G01070 411 / 4e-140 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10001906 [exp] 130 / 1e-33 AT4G01070 431 / 1e-147 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126000 [exp] 293 / 5e-96 AT3G16520 192 / 9e-56 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G089000 [exp] 293 / 8e-96 AT3G16520 174 / 3e-49 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069800 [exp] 148 / 4e-40 AT3G16520 496 / 7e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069600 [exp] 146 / 1e-39 AT3G16520 498 / 2e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G071000 [exp] 142 / 5e-38 AT3G16520 485 / 2e-169 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070000 [exp] 140 / 2e-37 AT3G16520 474 / 4e-165 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070900 [exp] 140 / 2e-37 AT3G16520 478 / 2e-166 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G150000 [exp] 137 / 4e-36 AT3G16520 503 / 1e-176 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.012G035800 [exp] 134 / 3e-35 AT3G16520 387 / 5e-131 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G150100 [exp] 132 / 2e-34 AT3G16520 451 / 9e-156 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10037117 pacid=23152599 polypeptide=Lus10037117 locus=Lus10037117.g ID=Lus10037117.BGIv1.0 annot-version=v1.0 ATGACAACCTCCGACGACCACCGCCCACACGTAGCCCTTCTCCCAAGCTCCGGCGCCGGCCACCTCACCCCATTCCTCCGTCTAGCAGCAACCTTACTCA CCAAAAACGTCCGAGTCACCTTAATCACCAGCCACCCAATCGTCACCGACGCCGAGTCATCTCTGATCTCCCATTTCCTCGCCGCCTTCCCACAAGTCTC AGAGCAGCAATTCCACATCCTACCCATAGACCCATCCACCGCCAACTCCACCGACCCATTCTTCCTCCAGTGGGAATCCATCCGTCGCTCCCTCCACCTC CTCTCCTCCATCTTCTCCTCCATCTCCCCGCCGCCGGCTGCAATGGTCTCCGACATAACACTAATTTCCTCAACCATCTCCGTCTCCCAGGACCTTCAAA TCCCCAACTACGTCCTCTTCACTTCCTCCGCCAGAATGCTGTCTTTGGTAACCCGCTACCCTGCCTTCACCAAAACCCAGATCGAATCCGCCGACAAGTT TGAAATCTCGGGAATCGGAGACTTACCCAGATCGTCGATCCCGCCGTTGCTTCTAAAGCCGGAGTCTTTATTCGCCACCATGTTCAAATCCAACAGCGAG AATCTCCGCAAGTTCGACGGAATCCTGATCAACACGTTTGACAGGCTGGAGACGGAAGCTCTGTCAGCGATCAGGAAAGGGGATGTTGCAGATGGGTTAC CGGATTTGTTCAATATCGGATTGATTCCTCACGATTTCGAGAGGAAATCAGTGGGTGGAGGAAAGACGGAAGAGGTGATGAAATGGTTGGATGGGAAGGA GGCGAATTCGGTGGTGTATGTGAGCTTCGGAAGCAGGACGGCTCTGTCGAGAGATCAGATTAAGGAGCTGGGGAAAGGGTTGGTTGAGTCAGGGTTTGGA TTTGTTTGGGTGATGAAGGATAAGGTTATAGACAAGGAAGATGGGGAGAGATTGGAGGATGTTTTGGGAGAGGAGATGATGGAGGAGGGTGGGGGAAGAG GGTTAGTGGTGAAGGAATGGGTGGATCAAGTTGAAGTGATTGGGCATGATTCGGTTGGTGGGTTTGTGAGCCATTGTGGGTGGGTGAGAAGAAGGTGA
AA sequence Show only first row Show all	>Lus10037117 pacid=23152599 polypeptide=Lus10037117 locus=Lus10037117.g ID=Lus10037117.BGIv1.0 annot-version=v1.0 MTTSDDHRPHVALLPSSGAGHLTPFLRLAATLLTKNVRVTLITSHPIVTDAESSLISHFLAAFPQVSEQQFHILPIDPSTANSTDPFFLQWESIRRSLHL LSSIFSSISPPPAAMVSDITLISSTISVSQDLQIPNYVLFTSSARMLSLVTRYPAFTKTQIESADKFEISGIGDLPRSSIPPLLLKPESLFATMFKSNSE NLRKFDGILINTFDRLETEALSAIRKGDVADGLPDLFNIGLIPHDFERKSVGGGKTEEVMKWLDGKEANSVVYVSFGSRTALSRDQIKELGKGLVESGFG FVWVMKDKVIDKEDGERLEDVLGEEMMEEGGGRGLVVKEWVDQVEVIGHDSVGGFVSHCGWVRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10037117 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	3.5	0.8316
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	5.0	0.8427
					Lus10032433 [exp]	7.1	0.8137
					Lus10009357 [exp]	8.8	0.7818
					Lus10013473 [exp]	9.5	0.7667
AT5G35390			Leucine-rich repeat protein ki...		Lus10022946 [exp]	11.0	0.7628
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10017749 [exp]	16.2	0.7989
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10008865 [exp]	17.2	0.7930
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018704 [exp]	17.9	0.7271
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024889 [exp]	22.5	0.7597

Compare expression of checked genes

Lus10037117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.