Plant FIBer expression Database

Lus10037118 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03420 171 / 6e-55 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036810
[exp]
272 / 1e-94 AT2G03420 172 / 2e-55 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G161400
[exp]
189 / 6e-62 AT2G03420 160 / 2e-50 unknown protein
PFAM info
Representative CDS sequence
>Lus10037118 pacid=23152516 polypeptide=Lus10037118 locus=Lus10037118.g ID=Lus10037118.BGIv1.0 annot-version=v1.0
ATGAACTCCGTCTCCCAATCTTCGATTTTCCAGATTTCTTCAGCCACATTCACCGTAGTCCCTAAACTGCCGAGCTCTCGGAAGCAGCTCCCGGTCTCAG
TTGCTTGCTCCTGCAAGTCACCCACAAGCTTCATTAATGGCTTTTCTAAGGCTTTAGTAGCCACTGCTGCTGCTGTCGCCATTCTCGTCTCTGCATCGCC
AGCAAAAGCTGGATTGATGTCAGGCTTCTCTGGGATAGAATCAGTACCAGGTCCTGAACTGCCTAAGATGGACTTCCTCACTCGTTTCAATGATGAGAAC
CAGAAGAAGTATGCTGAGGATGATGCAAGATTCAAATCATCTCCTATTCTCAAGGAGCTTCTTGAGAAATCCAAGCTCAACCAAGAAAAGAACAAGAAGG
AGATACAGGACAAGTACTGCATTCGAGGGGCGGAATGGGGGGTTGGTGATTGTTCAGCAGAGGGTATGACTCCACAGCAGAAAGATGAGTTCATAGCAAT
GCTGAAACAGAAGGCTGGAATCAAAGAATGA
AA sequence
>Lus10037118 pacid=23152516 polypeptide=Lus10037118 locus=Lus10037118.g ID=Lus10037118.BGIv1.0 annot-version=v1.0
MNSVSQSSIFQISSATFTVVPKLPSSRKQLPVSVACSCKSPTSFINGFSKALVATAAAVAILVSASPAKAGLMSGFSGIESVPGPELPKMDFLTRFNDEN
QKKYAEDDARFKSSPILKELLEKSKLNQEKNKKEIQDKYCIRGAEWGVGDCSAEGMTPQQKDEFIAMLKQKAGIKE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G03420 unknown protein Lus10037118
[exp]
0 1
AT3G61870 unknown protein Lus10010112
[exp]
2.6 0.9441
AT5G43750 PnsB5, NDH18 Photosynthetic NDH subcomplex... Lus10021890
[exp]
4.5 0.9408
AT1G61600 Protein of unknown function (D... Lus10031916
[exp]
5.7 0.9255
AT4G37925 NdhM, NDH-M NADH dehydrogenase-like comple... Lus10029727
[exp]
6.2 0.9378
AT1G74880 NdhO, NDH-O NADH dehydrogenase-like comple... Lus10002095
[exp]
6.9 0.9272
AT4G37925 NdhM, NDH-M NADH dehydrogenase-like comple... Lus10029728
[exp]
8.0 0.9373
AT4G34090 unknown protein Lus10041575
[exp]
8.1 0.9207
AT5G21430 NdhU, CRRL NADH dehydrogenase-like comple... Lus10027616
[exp]
9.5 0.9295
AT4G22890 PGR5-LIKEA, PGR... PGR5-LIKE A (.1.2.3.4.5) Lus10006710
[exp]
10.0 0.9357
AT5G13720 Uncharacterised protein family... Lus10019743
[exp]
11.3 0.9198

Lus10037118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.