Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69340 916 / 0 appr-1-p processing enzyme family protein (.1) AT2G40600 74 / 1e-14 appr-1-p processing enzyme family protein (.1) AT4G35750 61 / 2e-10 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G10210 54 / 5e-08 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036809 [exp] 1065 / 0 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10030413 [exp] 923 / 0 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10034226 [exp] 77 / 5e-16 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1) Lus10034225 [exp] 75 / 3e-15 AT2G40600 286 / 1e-98 appr-1-p processing enzyme family protein (.1) Lus10029039 [exp] 73 / 1e-14 AT2G40600 310 / 3e-108 appr-1-p processing enzyme family protein (.1) Lus10031044 [exp] 68 / 2e-12 AT3G10210 353 / 3e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10035431 [exp] 68 / 2e-12 AT3G10210 353 / 2e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10005640 [exp] 63 / 4e-11 AT4G35750 260 / 6e-89 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10041841 [exp] 62 / 9e-11 AT4G35750 323 / 7e-114 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G093100 [exp] 960 / 0 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.010G161500 [exp] 959 / 0 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.013G092700 [exp] 86 / 4e-19 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1) Potri.005G246800 [exp] 70 / 2e-13 AT4G35750 282 / 9e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G107300 [exp] 61 / 2e-10 AT4G35750 284 / 1e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.002G014700 [exp] 59 / 8e-10 AT4G35750 296 / 3e-103 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.006G043166 [exp] 59 / 1e-09 AT3G10210 359 / 6e-127 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0223 [flax] [poplar] MACRO PF01661 [flax] [poplar] Macro Macro domain
Representative CDS sequence Show only first row Show all	>Lus10037119 pacid=23152458 polypeptide=Lus10037119 locus=Lus10037119.g ID=Lus10037119.BGIv1.0 annot-version=v1.0 ATGTACAGGGGTGTGTCTTCGGCTGCCACCACCCGTGGTGGTTCCCCCACGGACAGTGGGGATTCTGTTGTGACATTAGATCAAGTTCCACGATGGAGCG ATGTAGAGAGTAGGCCTACTTATGGTTATGATAACATGGATCCTTCATTTGCAAATCCATTCTTCCCTGATCCTTTAGCATCTAGTCCTGATGGGGATAA CAATGGGAATGGAGTGGTATCGAGATTCCCGGTTGACCATGAAATCAACTCCAAGATACATCTATGGAGAGGAAACCCGTGGAATCTTGAGGTTGATGCG GTAGTGAATTCGACAAACGAGAACCTCGACGAAGCACACAGCAGTACTGGTCTGCATGCTGCAGCTGGACCCGGTCTTGCAGAGGAATGTGCAACACTGG GTGGATGCAGAACAGGAATGGCAAAAGTTACTAATGCATATGATCTTCCTGCTAGGAGAGTTATTCATACCGTCGGTCCAAAGTATGCTGTGAAATATCA TACTGCTGCCGAGAACGCCTTGAGCCACTGTTATAGAGCTTGCCTTGAGTTACTCATTGACAATGAGCTTGAAAGCATTGCTATGGGATGTATATATACT GAAGCTAAAAACTATCCCCGTGAACCAGCTGCACATGTTGCTATAAGAACTGTTCGGCGTTTTCTTGAGAAGCAGAGGGATAAGATTACAGCAGTTGTAT TTTGTACCACCACCACGATTGATACTGAAATATATAAAAGGCTGCTGCCACTCTATTTTCCGCGAGATAAACACGAAGAGGAGGTGGGCATATCCAAACT TCCCGCTGATGTTGGGGACGAGAATGGAGAGACGACAATAGATGAACGCAAAATCAGAATAAAGCCTTTGCCCAAGAAAAACATTCCGAAACCTCCTGAA ACTCACGAAGAGCTACCTATTAACGACGTGAGCTTGGTGCGAAGAGACTCCGCATATTTGGATTCATATTTGGATCCAGCGTTCATGTCCTTAATAAAGG ATCCAGATCAGAGACGCAGGGAGCAGTGGGAAAAAACTGCTCAAGCACAAAGCGGGTTTAACTTCGCCAAGCTGCTTGGTTTTGGCGATCTCGGTGGTCC TCCTTTGTCTGTTGCCGAAGAGTACTCTTTGCATTCTCGATATCTCGCTAAAGCTAACTCTCTTAATCTCTCCGAAATTGCAGAGATGAAAATTGTTTAC CGCGGTGGGGTAGACAGCGAAGGCCGGCCAGTAATGGTCGTTGTGGGAGCACACTTCTTGCTAAGATGTCTTGATCTGGAGAGATTTGTGCTTCACGTCA TCAAGGAATTCGAGCCTTTGATCCAGAAGCCATTTTCGATCGTGTATTTCCATTCTGCAGCATCGTTACAGCTGCAACCGGACTTGGGATTCATGAGGAA ACTACAGCAAATACTTGGCCGAAAACACCAGAGAAATCTCCATGCAATCTATGTCCTCCATCCGACATTACATCTAAAAGCGGTAGTTCTTGGGATGCAA ATGCTGGTAGATAACGTGACATGGAAGAAGGTCGTATACGTAGACAGGCTTCTGCAACTCTTCAAATACGTCCCCCGCGAGCAATTGACCATCCCCGATT TTGTCTTCCAGCACGACTTGGAAGTCAACGGAGGGAAGGGTCTTATCATAGACCCGCGAACGAAATATGTGTACCAACGACCCTCTTAG
AA sequence Show only first row Show all	>Lus10037119 pacid=23152458 polypeptide=Lus10037119 locus=Lus10037119.g ID=Lus10037119.BGIv1.0 annot-version=v1.0 MYRGVSSAATTRGGSPTDSGDSVVTLDQVPRWSDVESRPTYGYDNMDPSFANPFFPDPLASSPDGDNNGNGVVSRFPVDHEINSKIHLWRGNPWNLEVDA VVNSTNENLDEAHSSTGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRACLELLIDNELESIAMGCIYT EAKNYPREPAAHVAIRTVRRFLEKQRDKITAVVFCTTTTIDTEIYKRLLPLYFPRDKHEEEVGISKLPADVGDENGETTIDERKIRIKPLPKKNIPKPPE THEELPINDVSLVRRDSAYLDSYLDPAFMSLIKDPDQRRREQWEKTAQAQSGFNFAKLLGFGDLGGPPLSVAEEYSLHSRYLAKANSLNLSEIAEMKIVY RGGVDSEGRPVMVVVGAHFLLRCLDLERFVLHVIKEFEPLIQKPFSIVYFHSAASLQLQPDLGFMRKLQQILGRKHQRNLHAIYVLHPTLHLKAVVLGMQ MLVDNVTWKKVVYVDRLLQLFKYVPREQLTIPDFVFQHDLEVNGGKGLIIDPRTKYVYQRPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69340			appr-1-p processing enzyme fam...		Lus10037119 [exp]	0	1
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037325 [exp]	3.7	0.8691
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10007698 [exp]	4.5	0.8618
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	7.3	0.8946
AT4G24480			Protein kinase superfamily pro...		Lus10042868 [exp]	7.7	0.8864
AT2G16460			Protein of unknown function (D...		Lus10018079 [exp]	10.7	0.8592
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	11.1	0.9004
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	11.8	0.8561
AT1G63500			Protein kinase protein with te...		Lus10008494 [exp]	13.8	0.8749
AT1G34540		CYP94D1	"cytochrome P450, family 94, s...		Lus10041637 [exp]	13.9	0.9045
AT3G17920			Outer arm dynein light chain 1...		Lus10041988 [exp]	17.0	0.8427

Compare expression of checked genes

Lus10037119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.