Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03390 369 / 9e-128 uvrB/uvrC motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036809 [exp] 622 / 0 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G161600 [exp] 418 / 6e-147 AT2G03390 417 / 6e-147 uvrB/uvrC motif-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [flax] [poplar] AAA_lid PF02151 [flax] [poplar] UVR UvrB/uvrC motif CL0671 [flax] [poplar] PF08755 [flax] [poplar] YccV-like Hemimethylated DNA-binding protein YccV like
Representative CDS sequence Show only first row Show all	>Lus10037120 pacid=23152392 polypeptide=Lus10037120 locus=Lus10037120.g ID=Lus10037120.BGIv1.0 annot-version=v1.0 ATGCTCCGAGGCCAAGGTCTGTCGCCAGGCACTCTAACAACGTACGGTAACTGTGGGATTTCCGCAAGGATTCCATGTTGGAGGAGGCATTTTAAGCTTG AATGGAAGACCAGTAGATTACACTTCGGATTTGGTATGGATTTGGCGAGCAAGTGTAATAATAATAATGTAATGGGGAGAAGGAGTTTGAGAGTTGAAGC TGGATGGCTGTTCAGTGGCAACAGTGGGAATCAAGACTCGAATTCGGGTGCAAGACTCGAGCAAAGCGAGAGCGTGAATGAGGACATTCTCATCTTCTTC TTCCAGCTTGATCTCGCAACTCGTGTTCAGTGTGCTCTGAACATGGAACAATATGACGTTGCTCAACAGCTCAGAAACAAGCTTACTGAGGTTGAGCAAG ACATTGTGAAGCGAAGGGACACCACAAGAGGAACATCCTCGAAGAGTGAAGCGCAAGACAAGGCGATTAATATGATAAGACTACGTGCGGACTTACAGAA TGCGATAGAGAAGGAGGATTACGCTCTGGCAGCTGAGTTTAGGGATCAGATCTCTAAACTGGAGAAAGAATCTTTGGCTGCATCTGCTGAAGCCTTGGCA TATGCAAATGTACAGTATGCATTTCGTTTAGGGCAGAAAGTGAGGCACAAAATCTATGGTTATAGAGCAGTGATTTGTGGGATGGATCCTGTTTGCTGCG AATCAAGCTCCTGGATGGAAGCTGCAAAGATTCAGAAGCTGGATCGAGGTCCTAATCAACCGTTTTACCAGGTTTTGGTTAATGTAAATCAAGACCCAAA TATACTAGTCACATATGTTGCTGAGGATAGTTTGATAGCTCCAGAAAAACCTGACTTGGAAAGGTTCGATCATCCCTATGCATCCTTCTTATTCTATGGG GTGGATACAGCAGGAGACTTCATCCCTGTCAAGCAACTACGCGAGAAGTTCAATAGACCACGCCATGAAGTGCCGACAGATCCACCGGATGAAAACAGTG GAAGCAGCCCTTGA
AA sequence Show only first row Show all	>Lus10037120 pacid=23152392 polypeptide=Lus10037120 locus=Lus10037120.g ID=Lus10037120.BGIv1.0 annot-version=v1.0 MLRGQGLSPGTLTTYGNCGISARIPCWRRHFKLEWKTSRLHFGFGMDLASKCNNNNVMGRRSLRVEAGWLFSGNSGNQDSNSGARLEQSESVNEDILIFF FQLDLATRVQCALNMEQYDVAQQLRNKLTEVEQDIVKRRDTTRGTSSKSEAQDKAINMIRLRADLQNAIEKEDYALAAEFRDQISKLEKESLAASAEALA YANVQYAFRLGQKVRHKIYGYRAVICGMDPVCCESSSWMEAAKIQKLDRGPNQPFYQVLVNVNQDPNILVTYVAEDSLIAPEKPDLERFDHPYASFLFYG VDTAGDFIPVKQLREKFNRPRHEVPTDPPDENSGSSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03390			uvrB/uvrC motif-containing pro...		Lus10037120 [exp]	0	1
AT4G24090			unknown protein		Lus10017325 [exp]	5.8	0.8340
AT1G68010		ATHPR1, HPR	hydroxypyruvate reductase (.1....		Lus10014115 [exp]	11.4	0.8383
AT4G10000			Thioredoxin family protein (.1...		Lus10001283 [exp]	13.0	0.7929
AT3G56010			unknown protein		Lus10040939 [exp]	16.3	0.7946
AT4G25970		PSD3, PSD2	phosphatidylserine decarboxyla...		Lus10015839 [exp]	17.1	0.7369
AT5G27560			Domain of unknown function (DU...		Lus10029929 [exp]	17.4	0.8226
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10022856 [exp]	19.4	0.7351
AT2G23390			unknown protein		Lus10010689 [exp]	27.2	0.7769
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10036049 [exp]	27.3	0.6999
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10028120 [exp]	32.9	0.7620

Compare expression of checked genes

Lus10037120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.