Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69360 150 / 2e-37 Plant protein of unknown function (DUF863) (.1) AT1G13940 125 / 2e-29 Plant protein of unknown function (DUF863) (.1) AT1G26620 112 / 3e-25 Plant protein of unknown function (DUF863) (.1) AT5G67390 49 / 2e-06 unknown protein AT5G61300 50 / 4e-06 unknown protein AT5G07790 48 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036807 [exp] 1207 / 0 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1) Lus10030419 [exp] 390 / 9e-122 AT1G13940 397 / 1e-121 Plant protein of unknown function (DUF863) (.1) Lus10026640 [exp] 299 / 3e-89 AT1G13940 323 / 7e-96 Plant protein of unknown function (DUF863) (.1) Lus10021644 [exp] 60 / 8e-09 AT1G13940 105 / 5e-23 Plant protein of unknown function (DUF863) (.1) Lus10034722 [exp] 54 / 6e-07 AT1G13940 106 / 3e-23 Plant protein of unknown function (DUF863) (.1) Lus10011080 [exp] 50 / 1e-06 AT5G67390 91 / 7e-23 unknown protein Lus10019291 [exp] 49 / 4e-06 AT5G67390 95 / 2e-24 unknown protein Lus10011531 [exp] 48 / 9e-06 AT5G67390 97 / 3e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G092800 [exp] 312 / 2e-92 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 309 / 2e-91 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.017G088900 [exp] 84 / 3e-16 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1) Potri.004G125900 [exp] 84 / 3e-16 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.003G112000 [exp] 51 / 3e-06 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.007G053300 [exp] 49 / 3e-06 AT5G67390 100 / 3e-26 unknown protein Potri.001G121200 [exp] 50 / 4e-06 AT1G62530 106 / 5e-25 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.018G090000 [exp] 47 / 2e-05 AT5G57340 72 / 8e-15 unknown protein Potri.005G145800 [exp] 46 / 4e-05 AT5G67390 87 / 1e-21 unknown protein Potri.018G020800 [exp] 46 / 9e-05 AT1G69360 54 / 2e-07 Plant protein of unknown function (DUF863) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05904 [flax] [poplar] DUF863 Plant protein of unknown function (DUF863)
Representative CDS sequence Show only first row Show all	>Lus10037122 pacid=23152617 polypeptide=Lus10037122 locus=Lus10037122.g ID=Lus10037122.BGIv1.0 annot-version=v1.0 ATGGGAACAAAAGTGCAGCGCGAAAGCTACTTTCCAGGGATTCCTCGAGTGAGGGATCTTGCTGATGATTCCAACAGCTATAACCGCATGGTACATTGTG GAGATAAAACCTTCACAAATGGTCAATACTACAATGGTCTCTTACATTCCGGGCATGATAAGGACTTAGTCAAGCGAACGATGCTCGAGCACGAGGCTAT GTTCAGGAACCAGCTGTATGAACTCCACCGCCTCTACAGAATACAAAGGGACATGATGAATGCAGTTAAGACGAATGGAAGTACTTTATGGGATGCGGAG ATATTGGAGTCTAGGCCTACAAAGGCGAGGAGAAAGATGTTTGATCTTCGTCTTCCAGCTGATGAGTACATAGATACAGAAGAAGTGAAACCGTTAGCCA AGGGGAATCCTTATAATTCGAGCAAGAACAGTTTCGACCAGAATAATTGCCAGGTTGATGTTTCACTGCCGGGTTCACGTGCGGGGGTTAAGACTGGCAT GGCTGATTTGAATGAACCGATTATGATCGAAGACACCGGTACCTCCAAACATCTTTTTCACTCGAAAATTAGAGGGACACAATTCGATGATAAGCAGAAG TCGAGACTTGAGTTTTCTTCAGATGAGATATGGCAGAAGTTTCATCGTGGGAGTAATGACAATTCTAGTAATTGGAATCCAGAAACGGCTATTTCTTCCA GGATGTCAACTCAATATAAATTCGTTCTGGATTCGAGTAAGCCAAACGGCATGTTATATCAGAATGCAGTGCATTTGAACTCATCTTCAGCATTGAGGAA AAGTTCTGATTCATCAGCTCAAAGTATCGGAATTTTTGGAGATCGGTGGAAGTGTAACAACATCTCTACATCGAACCAGGAGTTCGGAAGTGAAAGGTCT TATCGAAACGGATATTATTACCACGACATTTCTGCAGGGTCTGAGGAGCTACAGCATTTGACTCCTCCTGGAAGCTACGGTCATTTGAACCGGAGCACTG CTGACAATTTAGCTACTGATAACCTAATCAAGCATGGTTCGGCAAAGTTCTATCGTGGTTCCTCGAATAAGGCAGCTACCTGGCGTGGTATTGAGGTCAT AGATTTGGAAAGGAATGATGATAACAATCGTTCTTCTTTCTCGTGGCTAAGGGCTATACCGGCTCCCCAACACAAAGAATCGTTCTTGGACGGCTCCACG AGCTGCCACCGGAAGATTCTTGGCTTTCCGATTTTTCAGGATGCACATGTACCTAAGAAAGAGACATCTTATTTTACCTTTACTTCTATCTCAATTCCTC ACCCACCCGAAGTGAAGGTTGGAAGCAAGGTGAATAAGTTACAATTCGATATTAACATGCCCTCAGATGAAATGGGGATTGCTACAGAGGAAAAAGATGC CAAAGCTTCCAACTTTAGATGTGAGATTGACCTGAACTCTTGTATAAGTGAAGATGAAGCTTCTTTACTACCTTTAGTTCCGGACTCGAAGAAGAAATCT ACGGGGATCGATTTGGAAGCTCCGATAGTTCTTGAGGGTGAGGAGGAGGAGGTTGCTGTTCATGGCGAAGAATGCATGGCGAGGGATCATGAAGAACATT CGTCAATCAGACTGGCAGCTGAGGCAATCATTGCGATATCGTTGTCAGCTTCCCAAGATCAATGGCCCGGATCGAATTGTAGCCTTCCTGAAGAAGTGTA TGCAGCACCAGATCCTCTTCGGTGGTTTGCAGACATTATCACTGCTTGGAAGGTTAGAGACAATGACTCCTCGTCCTTCGAGGAGTTAGATTACTTCGAG TCGATGACATTGAAATTGGCGGAGACTAAAGAAGAGGATTACATGCCAAAACCACTGGTTCCGGAAGGCTTGCAACTGGACGAAACAGGAACCAGCCACT CTCGAACTCAAAGAGGTAATGCTCGACGAGGAAGGCAGAGAAGAGATTTCCAAAGGGACATCCTTCCGGGACTCGGTTCTCTATCGAGGCATGAAGTGAC GGAAGATCTTCAGACATTTGGAGCGTTGATGAGAGCAACAGGCGTTACTTGGCATGCAAGGAACTCCACCAGAAGTGGTTCCGGTAGGGGAAGAAGGCGA TCGCTGACGATTTCTCCTCCTCCGCCTTGCAATCCGTTGATACAACAACTGAGTTCTGTCGAAGCGGGATTGGATGACAGAAGCCTGAGAGGTTGGGGGA AAACAACTAGGCGTCCTCGTAGGCAAAGATGCTCGGCTGGTAATCTTCCAACTATTCCTGTAACCTGA
AA sequence Show only first row Show all	>Lus10037122 pacid=23152617 polypeptide=Lus10037122 locus=Lus10037122.g ID=Lus10037122.BGIv1.0 annot-version=v1.0 MGTKVQRESYFPGIPRVRDLADDSNSYNRMVHCGDKTFTNGQYYNGLLHSGHDKDLVKRTMLEHEAMFRNQLYELHRLYRIQRDMMNAVKTNGSTLWDAE ILESRPTKARRKMFDLRLPADEYIDTEEVKPLAKGNPYNSSKNSFDQNNCQVDVSLPGSRAGVKTGMADLNEPIMIEDTGTSKHLFHSKIRGTQFDDKQK SRLEFSSDEIWQKFHRGSNDNSSNWNPETAISSRMSTQYKFVLDSSKPNGMLYQNAVHLNSSSALRKSSDSSAQSIGIFGDRWKCNNISTSNQEFGSERS YRNGYYYHDISAGSEELQHLTPPGSYGHLNRSTADNLATDNLIKHGSAKFYRGSSNKAATWRGIEVIDLERNDDNNRSSFSWLRAIPAPQHKESFLDGST SCHRKILGFPIFQDAHVPKKETSYFTFTSISIPHPPEVKVGSKVNKLQFDINMPSDEMGIATEEKDAKASNFRCEIDLNSCISEDEASLLPLVPDSKKKS TGIDLEAPIVLEGEEEEVAVHGEECMARDHEEHSSIRLAAEAIIAISLSASQDQWPGSNCSLPEEVYAAPDPLRWFADIITAWKVRDNDSSSFEELDYFE SMTLKLAETKEEDYMPKPLVPEGLQLDETGTSHSRTQRGNARRGRQRRDFQRDILPGLGSLSRHEVTEDLQTFGALMRATGVTWHARNSTRSGSGRGRRR SLTISPPPPCNPLIQQLSSVEAGLDDRSLRGWGKTTRRPRRQRCSAGNLPTIPVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69360			Plant protein of unknown funct...		Lus10037122 [exp]	0	1
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	3.5	0.8695
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	5.8	0.8612
AT5G14720			Protein kinase superfamily pro...		Lus10032144 [exp]	6.5	0.8603
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10025955 [exp]	8.5	0.8430
AT2G16365			F-box family protein (.1.2.3.4...		Lus10023554 [exp]	8.7	0.8338
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Lus10024709 [exp]	9.5	0.8342
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10021329 [exp]	9.7	0.8556
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10009770 [exp]	10.9	0.8302
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10002104 [exp]	13.1	0.8571
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10021317 [exp]	13.1	0.7853

Compare expression of checked genes

Lus10037122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.