Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03370 246 / 1e-77 Glycosyltransferase family 61 protein (.1) AT2G03360 241 / 2e-75 Glycosyltransferase family 61 protein (.1.2) AT2G41640 183 / 5e-53 Glycosyltransferase family 61 protein (.1.2) AT3G57380 171 / 1e-48 Glycosyltransferase family 61 protein (.1) AT3G10320 170 / 5e-48 Glycosyltransferase family 61 protein (.1) AT3G18180 117 / 5e-29 Glycosyltransferase family 61 protein (.1) AT3G18170 109 / 1e-26 Glycosyltransferase family 61 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036806 [exp] 528 / 0 AT2G03370 381 / 4e-129 Glycosyltransferase family 61 protein (.1) Lus10018048 [exp] 191 / 9e-56 AT2G41640 569 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10031057 [exp] 186 / 1e-53 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10035441 [exp] 182 / 2e-52 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018046 [exp] 174 / 1e-49 AT3G10320 530 / 0.0 Glycosyltransferase family 61 protein (.1) Lus10042043 [exp] 113 / 2e-28 AT3G10320 335 / 1e-112 Glycosyltransferase family 61 protein (.1) Lus10032460 [exp] 109 / 6e-26 AT3G18180 308 / 2e-100 Glycosyltransferase family 61 protein (.1) Lus10016707 [exp] 106 / 5e-25 AT3G18180 367 / 3e-122 Glycosyltransferase family 61 protein (.1) Lus10036003 [exp] 104 / 4e-24 AT3G18180 360 / 2e-119 Glycosyltransferase family 61 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G162200 [exp] 251 / 3e-79 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 229 / 8e-71 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 210 / 1e-63 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2) Potri.006G048500 [exp] 192 / 4e-56 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.016G057000 [exp] 179 / 3e-51 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.012G051500 [exp] 127 / 4e-32 AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1) Potri.015G042300 [exp] 122 / 3e-30 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.015G042200 [exp] 106 / 6e-25 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [flax] [poplar] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Lus10037123 pacid=23152336 polypeptide=Lus10037123 locus=Lus10037123.g ID=Lus10037123.BGIv1.0 annot-version=v1.0 ATGCATCCTCCTCGATATCCACCTATCAAATGCCACACCAGAAACACCAGTCACAAGCATCTCAGACAGCTAGGAGTTCCAAGACATAAGGATCAAGGAG TCTTGGATATATCTGCCTCACCCCCACACCAACTCATCTTCCATATTCCGAACCATCAGACACAGTACACCGCCAATAATGAGGATAGTGTTGTTGAGTT GAATTTAATTCCACGTGTCGTCTTAGATGGAAGGAACCTCTGCTCGGACCCCACCACCTCCACATTCTACACCTTCGGCCCACAGGCGGTCCAGAAAATC AAGCCTTACCCAAGAAAGCAAGACTTCTTCTCAATGAGCCTGATCCAGGAACTGACGCTATTGTCCGGCCCGATAACAGGCCTAACTTCAACGTGTCAAG CTCATCGCAGCGACTTCCCGGCGATGGTATTCAGTGCCGGCGGGTACACCGGAAACTTCTTCCACGACTTCAGCGAAGGATTCGTCCCTCTCTTCATCAC CGTCAGCACTCTCTTCGCCGACCTGCGCGACTTCGTCCTCGTCGTCTCCGAAGCTCATGACGGGTGGATCAGGAAGTACTCCGACCTCCTCCAGTACTTC ACCAGGCACCCGATCGTCTTCATCGGCAATGGCACGAACGTCAACGCTTCCGACGTCACGCTCTGCTTCGGATCCGCCGTCGTCGGGCTGATCTCCCACG GGATGCTGACAATGAACCCCAACTTAATCCCCGGATCCTTAAGCCTGGTCAATTTTCGCGACCTGCTGGAAGAAGCCTATGGGATCTGGGTCAGATCTGG GGTCTCCGACCCGGCCCAACCCAATAATAATAGTGGCACTGGATCAATGGCGATTGGGGCAAGATCAGACGGATCTGGATCGCGGAGGCCGAGGATGGTG CTGATAAGCAGGCCGAAGAGGGTCGGTAGGGCAATGCTGAGCGAGGAGGAGATGAGGGCGGCGGCGGAGGAGGTGGGATTCGAGGTGGTGATGTTCCGGC CGACGGGAGAGACTCCGGTGGTGCGGGAGGCGTACAAGCTGATGGATTCGGCTGACGCGATGATCGGAGTGCACGGGGCGGAGATGACCCACCTGCTGTT TATGCGGCCAGGGGCAGCATTCGTGCAGGTGGTGCCATTGGCAACAGAGTAG
AA sequence Show only first row Show all	>Lus10037123 pacid=23152336 polypeptide=Lus10037123 locus=Lus10037123.g ID=Lus10037123.BGIv1.0 annot-version=v1.0 MHPPRYPPIKCHTRNTSHKHLRQLGVPRHKDQGVLDISASPPHQLIFHIPNHQTQYTANNEDSVVELNLIPRVVLDGRNLCSDPTTSTFYTFGPQAVQKI KPYPRKQDFFSMSLIQELTLLSGPITGLTSTCQAHRSDFPAMVFSAGGYTGNFFHDFSEGFVPLFITVSTLFADLRDFVLVVSEAHDGWIRKYSDLLQYF TRHPIVFIGNGTNVNASDVTLCFGSAVVGLISHGMLTMNPNLIPGSLSLVNFRDLLEEAYGIWVRSGVSDPAQPNNNSGTGSMAIGARSDGSGSRRPRMV LISRPKRVGRAMLSEEEMRAAAEEVGFEVVMFRPTGETPVVREAYKLMDSADAMIGVHGAEMTHLLFMRPGAAFVQVVPLATE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03370			Glycosyltransferase family 61 ...		Lus10037123 [exp]	0	1
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10007853 [exp]	21.2	0.7083
AT4G33830			Glycosyl hydrolase family 10 p...		Lus10014645 [exp]	71.2	0.6377
AT2G14830			Regulator of Vps4 activity in ...		Lus10018577 [exp]	75.3	0.6202
AT1G48580			unknown protein		Lus10009051 [exp]	86.9	0.6415
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10004511 [exp]	96.3	0.6311
AT1G03890			RmlC-like cupins superfamily p...		Lus10033893 [exp]	194.2	0.6241
					Lus10033100 [exp]	201.0	0.6306

Compare expression of checked genes

Lus10037123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.