Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29150 662 / 0 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) AT2G26990 74 / 3e-14 COP12, ATCSN2, FUS12 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) AT3G61140 48 / 8e-06 EMB78, CSN1, COP11, ATFUS6, FUS6, ATSK31 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036805 [exp] 753 / 0 AT1G29150 718 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10008632 [exp] 750 / 0 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10042184 [exp] 453 / 3e-159 AT1G29150 425 / 2e-148 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10029167 [exp] 81 / 8e-19 AT1G29150 77 / 1e-18 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10012998 [exp] 81 / 4e-18 ND 44 / 4e-06 Lus10037417 [exp] 79 / 9e-16 AT2G26990 799 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Lus10041295 [exp] 78 / 2e-15 AT2G26990 798 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Lus10041364 [exp] 42 / 0.0006 AT3G61140 708 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Lus10036566 [exp] 42 / 0.001 AT3G61140 709 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G020300 [exp] 712 / 0 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.010G164200 [exp] 709 / 0 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.008G042400 [exp] 697 / 0 AT1G29150 611 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.006G277900 [exp] 569 / 0 AT1G29150 498 / 1e-175 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.001G222700 [exp] 82 / 1e-16 AT2G26990 772 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Potri.009G020900 [exp] 81 / 2e-16 AT2G26990 815 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Potri.002G154500 [exp] 43 / 0.0003 AT3G61140 681 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1) Potri.014G075500 [exp] 42 / 0.0008 AT3G61140 708 / 0.0 EMBRYO DEFECTIVE 78, COP9 SIGNALOSOME SUBUNIT 1, CONSTITUTIVE PHOTOMORPHOGENIC 11, SHAGGY-LIKE KINASE 31, ARABIDOPSIS THALIANA FUSCA 6, 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10037125 pacid=23152311 polypeptide=Lus10037125 locus=Lus10037125.g ID=Lus10037125.BGIv1.0 annot-version=v1.0 ATGTCTACTTCATACCTTCCCGCAACGACAGACACTATTGCTCAGGCTCTAGAAGCTAAGGATCCATCTGAAGCCATTTCCATTCTCTACCGTGTACTTG AGAATCCTTCTTCCTCTCCTGAAGCATTGCGCACAAAAGAACAGGCCATTACGAATCTGTCTGATCTGCTCAAACAAGAAAATAGGGCTGAGGACCTTCG TAGCCTTTTGACTCAGCTGAGGCCTTTCTTTGCCGTGATTCCCAAGGCCAAAACTGCCAAAATTGTCAGAGGGATAATCGACTCAGTTGCCAAAATCCCC GGAACTTCTGATCTGCAAATTTCCCTGTGCAAGGAGATGGTGCAATGGACTCGTGCAGAAAAGAGGACATTCCTTAGGCAGCGAGTTGAAGCAAGGCTTG CAGCGCTTCTTATGGAGAGCAAGGAGTATTCCGAAGCATTAGCGCTCCTTACCGACTTGGTGAAAGAGGTAAGGAGGTTGGACGACAAGTTGCTACTCGT GGACATAGACTTGCTAGAGAGTAAGCTGCATTTTTCGCTGAGAAATCTTCCCAAGGCAAAAGCTGCTCTTACAGCTGCAAGAACCGCTGCAAATGCGATA TACGTACCTCCAGCTCAGCAAGGAACGATCGATTTACAAAGCGGGATCCTTCATGCTGAGGAGAAGGATTACAAGACGGCTTACAGCTACTTCTTTGAAG CGTTCGAATCTTTCAACGCTCTCGAGGACCCCCGAGCAGTTTTCAGCCTCAAATACATGCTACTCTGCAAGATCATGGTTAGCCAAGCCGACGATGTTGC CGGTATAATATCCTCCAAAGCTGGTCTCCAGTATGTGGGGCCCGACTTGGATGCTATGAAAGCGGTCGCCGATGCTCACTCCAAGCGATCCTTGAAGTCG TTCGAAACGGCACTGCGGGACTACAAGGCTCAGCTGGAGGAAGATCCCATCGTGCATCGGCATCTCTCGTCTCTGTATGATACTTTACTGGAGCAGAATC TTTGCAGACTGATCGAGCCTTTCTCCAGGGTCGAGATTGCACATATCGCGGACCTGATTGAACTGCCTATCGATCACGTGGAGAAGAAGCTATCGCAGAT GATCTTGGACAAGAAGTTTGCTGGAACGCTGGATCAAGGCGCTGGCTGCCTTGTCATCTTTGACGATCCCAAGACGGATGCCATATATCCCGATACATTG GAGACCATTGCTAACATGGGTAAGGTGGTTGATAGTTTGTTTGCCAGGTCTGCTAAGATTATGGCTTGA
AA sequence Show only first row Show all	>Lus10037125 pacid=23152311 polypeptide=Lus10037125 locus=Lus10037125.g ID=Lus10037125.BGIv1.0 annot-version=v1.0 MSTSYLPATTDTIAQALEAKDPSEAISILYRVLENPSSSPEALRTKEQAITNLSDLLKQENRAEDLRSLLTQLRPFFAVIPKAKTAKIVRGIIDSVAKIP GTSDLQISLCKEMVQWTRAEKRTFLRQRVEARLAALLMESKEYSEALALLTDLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI YVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKS FETALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIADLIELPIDHVEKKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPDTL ETIANMGKVVDSLFARSAKIMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10037125 [exp]	0	1
AT5G14790			ARM repeat superfamily protein...		Lus10014533 [exp]	3.5	0.8384
AT5G52180			unknown protein		Lus10015101 [exp]	3.9	0.8551
AT2G29900		PS2	Presenilin-2 (.1)		Lus10031966 [exp]	5.3	0.8487
AT3G14240			Subtilase family protein (.1)		Lus10034178 [exp]	12.0	0.8231
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10025050 [exp]	12.6	0.7801
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	13.3	0.8417
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	17.8	0.8319
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Lus10023050 [exp]	18.5	0.7819
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10038993 [exp]	19.0	0.8011
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	19.3	0.7893

Compare expression of checked genes

Lus10037125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.