Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03350 190 / 2e-62 Protein of unknown function, DUF538 (.1) AT5G37070 120 / 6e-35 Protein of unknown function, DUF538 (.1) AT3G08890 119 / 2e-34 Protein of unknown function, DUF538 (.1.2) AT5G01610 117 / 1e-33 Protein of unknown function, DUF538 (.1) AT4G02360 60 / 7e-12 Protein of unknown function, DUF538 (.1) AT1G61667 57 / 8e-11 Protein of unknown function, DUF538 (.1) AT5G19860 54 / 3e-09 Protein of unknown function, DUF538 (.1) AT4G02370 50 / 4e-08 Protein of unknown function, DUF538 (.1) AT3G07470 47 / 4e-07 Protein of unknown function, DUF538 (.1) AT1G02816 47 / 5e-07 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036804 [exp] 260 / 3e-90 AT2G03350 224 / 9e-76 Protein of unknown function, DUF538 (.1) Lus10026639 [exp] 221 / 2e-74 AT2G03350 262 / 1e-90 Protein of unknown function, DUF538 (.1) Lus10030420 [exp] 218 / 4e-73 AT2G03350 259 / 1e-89 Protein of unknown function, DUF538 (.1) Lus10002862 [exp] 117 / 1e-33 AT3G08890 299 / 2e-105 Protein of unknown function, DUF538 (.1.2) Lus10012232 [exp] 116 / 2e-33 AT3G08890 297 / 1e-104 Protein of unknown function, DUF538 (.1.2) Lus10022674 [exp] 114 / 4e-32 AT3G08890 273 / 1e-94 Protein of unknown function, DUF538 (.1.2) Lus10012498 [exp] 107 / 1e-30 AT3G08890 214 / 1e-72 Protein of unknown function, DUF538 (.1.2) Lus10009854 [exp] 58 / 8e-11 AT1G02816 184 / 3e-60 Protein of unknown function, DUF538 (.1) Lus10010297 [exp] 57 / 1e-10 AT1G02816 184 / 4e-60 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G092500 [exp] 207 / 3e-69 AT2G03350 281 / 4e-98 Protein of unknown function, DUF538 (.1) Potri.010G162400 [exp] 203 / 1e-67 AT2G03350 277 / 1e-96 Protein of unknown function, DUF538 (.1) Potri.016G125300 [exp] 112 / 8e-32 AT3G08890 292 / 8e-103 Protein of unknown function, DUF538 (.1.2) Potri.006G104000 [exp] 112 / 8e-32 AT3G08890 296 / 1e-104 Protein of unknown function, DUF538 (.1.2) Potri.014G127500 [exp] 68 / 1e-14 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.005G024000 [exp] 60 / 2e-11 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 54 / 1e-09 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 53 / 4e-09 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 52 / 7e-09 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 51 / 3e-08 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10037126 pacid=23152400 polypeptide=Lus10037126 locus=Lus10037126.g ID=Lus10037126.BGIv1.0 annot-version=v1.0 ATGGAGAAAGCAGTGGCTAAAGTCAGCAGCTTGAGCATTGGTAGTTCCTGGATCTCCAAGAGAGCCAAGGAGGAGCTCTCCAATATCACTGCTTTGTCAA GCACAGTTGAAGAGAAGGCCAAATGGGTCTTCAGCAAGCTCAAAGGAAAGTCACTGAAATGCTTGTCGGATCTGTTGCGAGAGCACAACTTGCCACCGGG ACTCTTCCCACAGAACATAACCTGCTACGAATTCGACGAGACAACAAGCAAGTTGGTAGTGCACTTGCCTTCTTCCTGCGAGTTGACCTTCAAGGACTCT TCGGTGATCAAGTACTCTGTGCGAGTGAAAGCTGTCCTCGCAAAGGGGAAGCTCGATGGAATAGAGGGAATGAAGACTAAAGTTCTCGTATGGGTTAAGA TCACAAATGTAGCTGTTGAAAGCTACAAGTCTGATAAAGTCTGGTTTACTGCTGCTGGTGTGAAGAAGTCTAGACCAAAAACTCAGTACGAAGAATTCTG A
AA sequence Show only first row Show all	>Lus10037126 pacid=23152400 polypeptide=Lus10037126 locus=Lus10037126.g ID=Lus10037126.BGIv1.0 annot-version=v1.0 MEKAVAKVSSLSIGSSWISKRAKEELSNITALSSTVEEKAKWVFSKLKGKSLKCLSDLLREHNLPPGLFPQNITCYEFDETTSKLVVHLPSSCELTFKDS SVIKYSVRVKAVLAKGKLDGIEGMKTKVLVWVKITNVAVESYKSDKVWFTAAGVKKSRPKTQYEEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	2.0	0.9591
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10008603 [exp]	2.0	0.9569
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	2.4	0.9515
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10003048 [exp]	3.7	0.9431
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	3.9	0.9531
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10009513 [exp]	4.2	0.9197
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	4.9	0.9345
AT5G14020			Endosomal targeting BRO1-like ...		Lus10041527 [exp]	5.0	0.9136
AT1G08590			Leucine-rich receptor-like pro...		Lus10000814 [exp]	5.8	0.9207
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	6.0	0.9527

Compare expression of checked genes

Lus10037126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.