Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69390 246 / 1e-82 ARC12, ATMINE1 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036802 [exp] 401 / 7e-144 AT1G69390 253 / 3e-85 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Lus10026638 [exp] 288 / 5e-99 AT1G69390 247 / 4e-83 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Lus10030421 [exp] 285 / 5e-98 AT1G69390 248 / 9e-84 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G162600 [exp] 280 / 8e-96 AT1G69390 272 / 5e-93 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Potri.008G092300 [exp] 278 / 2e-95 AT1G69390 270 / 2e-92 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Potri.004G121000 [exp] 174 / 6e-55 AT1G69390 191 / 2e-61 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1) Potri.017G088401 [exp] 80 / 2e-19 AT1G69390 86 / 2e-22 accumulation and replication of chloroplasts 12, homologue of bacterial MinE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03776 [flax] [poplar] MinE Septum formation topological specificity factor MinE
Representative CDS sequence Show only first row Show all	>Lus10037128 pacid=23152603 polypeptide=Lus10037128 locus=Lus10037128.g ID=Lus10037128.BGIv1.0 annot-version=v1.0 ATGGCGATTTCATCAGGGGATCTGAGGGTCTCTGCAACTTTGGCATCATTCCATAAGCATCCATTTACAAGATTGCATTCTTCTTCCACTTCTAAGGTGG ACTTCACTGGATTCCCCAGCACAAGATTCGGAACCAATTCCCCACCTGCAATCATCTTTCCAAATCCTAAGCCGCATAGTCCCGTCTATCAATCTGCTGC ACCTTCTTCGGATTATCAGCTGTCCACAACATCAATAGACGAAGAAGACACCGAAACCTTCCTTCTCAGCACCATAAACATGAACCTCTTCCAACGGTTG AACTTGGCCTGGAAGATAATCTTCCCATCTCCCACCAGAAGGAGCTCGAATGCTAGGATTGCCAAGCAGCGGCTGAAGATGATCCTCTTCTCGGACCGGT GTGCAGTCAGCGACAAGGCCAAGAGGAAGATCGTGGGCAACATTGTAAATTCACTCTCGGAGTTTGTCGAGATCGAGTCTCAGGACAAAGTCCAGCTGAA TGTGAGTACCGACACGGACCTTGGGACCATGTACTCCGTAACGGTACCGGTTCGCAGAGTGAAGGCTGCGTATCTAGAGGGTGAGGAGATTGGATCCATA ACCAACATTGACTACAAAGACACTGGCGACCAATCTGGATCGGTTGATGTCATGTTCGATTTCTATGTCCCCAACGAAAGAACTCAGTGA
AA sequence Show only first row Show all	>Lus10037128 pacid=23152603 polypeptide=Lus10037128 locus=Lus10037128.g ID=Lus10037128.BGIv1.0 annot-version=v1.0 MAISSGDLRVSATLASFHKHPFTRLHSSSTSKVDFTGFPSTRFGTNSPPAIIFPNPKPHSPVYQSAAPSSDYQLSTTSIDEEDTETFLLSTINMNLFQRL NLAWKIIFPSPTRRSSNARIAKQRLKMILFSDRCAVSDKAKRKIVGNIVNSLSEFVEIESQDKVQLNVSTDTDLGTMYSVTVPVRRVKAAYLEGEEIGSI TNIDYKDTGDQSGSVDVMFDFYVPNERTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10037128 [exp]	0	1
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	1.7	0.9073
AT1G53520			Chalcone-flavanone isomerase f...		Lus10026174 [exp]	2.8	0.8986
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10036802 [exp]	2.8	0.8880
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10025022 [exp]	3.5	0.8630
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10027282 [exp]	4.9	0.8479
AT1G53800			unknown protein		Lus10037460 [exp]	5.3	0.8449
AT4G32915			unknown protein		Lus10006882 [exp]	5.7	0.8405
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10034690 [exp]	6.9	0.8953
AT5G57970			DNA glycosylase superfamily pr...		Lus10026083 [exp]	6.9	0.8317
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10025747 [exp]	7.3	0.8369

Compare expression of checked genes

Lus10037128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.